View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_high_27 (Length: 449)
Name: NF17117_high_27
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 40638027 - 40637583
Alignment:
| Q |
1 |
ctatgcagtatattgtagtaataaatataagctaccttaagcacaaagtaaaagcttttacatatgttcggtnnnnnnnnnnnnnnnnnctttatataat |
100 |
Q |
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| T |
40638027 |
ctatgcagtatattgtagtaataattataagctaccttaagcacaaagtaaaagcttttacatatgttcgg---aaaaaaaaaaaaaaactttatataat |
40637931 |
T |
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| Q |
101 |
atgcaattaaatcggttatttgcattgaccnnnnnnnn---tcaattatttggttgttttgtgtttggaattcatagacaggtggaattcatagatcttc |
197 |
Q |
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| T |
40637930 |
atgcaattaaatcggttatttgcattgaccaaaaaaaaaaatcaattatttggttgttttgtgtttggaattcatagacaggtggaattcatagatcttc |
40637831 |
T |
|
| Q |
198 |
taagtcttttatgcatatgatttggttgttttgtgtttggataatatggaaagaaaggaaatagaagaattttccacaacaaagaagctaagctatccca |
297 |
Q |
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| T |
40637830 |
taagtcttttatgcatatgatttggttgttttgtgtttggataatatggaaggaaaggaaatagaagaattttcgacaacaaagaagctaaactacccca |
40637731 |
T |
|
| Q |
298 |
attgttagataaaattaagttgcaattttattagcgttgaaggcaaaagattctacttttgcttttgattactatgtctggtggcttaatccctattgtg |
397 |
Q |
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| T |
40637730 |
attgttagataaaattaagttgcaattttattggcgttcaaggcaaaagattctacttttgcttttgattactatgtttggtggcttaatccctattgtg |
40637631 |
T |
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| Q |
398 |
catggg-------actcgctacgtagcttttctccttttattctctct |
438 |
Q |
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| T |
40637630 |
catgggcctcgctactcgctacgtagcttttctccttttattctctct |
40637583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 14068731 - 14068651
Alignment:
| Q |
203 |
cttttatgcatatgatttggttgttttgtgtttggataatatggaaagaaaggaaatagaagaattttccacaacaaagaag |
284 |
Q |
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| T |
14068731 |
cttttatgcatctgatttggttaccttgtgtttggacaatatggaaggaaatg-aataatagaattttcaacaacaaagaag |
14068651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 419
Target Start/End: Complemental strand, 19335137 - 19334895
Alignment:
| Q |
178 |
ggtggaattcatagatcttctaagtcttttatgcatatgatttggttgttttgtgtttggataatatggaaagaaaggaaatagaagaattttccacaac |
277 |
Q |
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||||| ||||| ||||||| |||||||||||||||| |||||||||||| ||||||| || ||||||||| |||| | |||| | ||||||| ||||| |
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| T |
19335137 |
ggtggtattcaaagatcttttaagtcttttatgcatttgatttggttgtcttgtgttcgggcaatatggaaggaaa-gtaataacaaaattttcgacaac |
19335039 |
T |
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| Q |
278 |
aaagaagctaagctatccc----aattgttagataaaattaagttgcaattttatt-agcgttgaaggcaaaagattctacttttgcttttgattactat |
372 |
Q |
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| T |
19335038 |
aaaaaagctcaactgcccccatttattattagataaaattaagttgcaatttttttaatggttgaagacaaa--attctatttttgttttcaattatcat |
19334941 |
T |
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| Q |
373 |
gtctggtggcttaatccctattgtgcatgggactcgctacgtagctt |
419 |
Q |
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| T |
19334940 |
gttcggcggcttaa-ccctattgtgcatgagactcactatgtagctt |
19334895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 329
Target Start/End: Original strand, 496855 - 496980
Alignment:
| Q |
201 |
gtcttttatgcatatgatttggttgttttgtgtttggataatatggaaagaaaggaaatagaagaattttccacaacaaagaagctaagctatcccaatt |
300 |
Q |
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||||||||||||| ||||||| |||| ||||||||||| ||||||| |||||| |||||| | ||||||| |||| ||||||||| |||| | ||||| |
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| T |
496855 |
gtcttttatgcatctgatttgtttgtcttgtgtttggacaatatgg-aagaaa--aaatagtataattttcgacaataaagaagctcagctgcctcaatt |
496951 |
T |
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| Q |
301 |
gttagataaaattaagttgcaattttatt |
329 |
Q |
| |
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| T |
496952 |
gttcgataaaattaagctacaatcttatt |
496980 |
T |
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