View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_high_31 (Length: 440)
Name: NF17117_high_31
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 5173509 - 5173922
Alignment:
| Q |
14 |
aacctgtggtgacctcttgatgatttctttcggctacggattccattatcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagattt |
113 |
Q |
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| T |
5173509 |
aacctgtggtgacctcttgatgatttctttcggctacggattccattatcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagattt |
5173608 |
T |
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| Q |
114 |
ctaatgataaaaatagatttgatgtctcaattgtgtcactaaattt-ggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173609 |
ctaatgataaaaatagatttgatgtctcaattgtgtcactaaattttggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttg |
5173708 |
T |
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| Q |
213 |
aaagcagcatttttagctataggataatgacaagtaacaacatgtcaaaagcctatgcacataattatttatcgttgtaaatcggatatccttcacgtgc |
312 |
Q |
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| T |
5173709 |
aaagcagcatttttagctataggataatgacaagtaacaacatgtcaaaagcctatgcacataattatttatcgttgtaaatcggatatccttcacgtgc |
5173808 |
T |
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| Q |
313 |
aactatatagactaatccctcgagttaaatagagtcacgagggtgatacaactctccattaagagttttaacgctgctgcattctcagagctggattgaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173809 |
aactatatagactaatccctcgagttaaatagagtcacgagggtgatacaactctccattaagagttttaacgctgctgcattctcagagctggattgaa |
5173908 |
T |
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| Q |
413 |
acctaggacctatg |
426 |
Q |
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|||||||||||||| |
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| T |
5173909 |
acctaggacctatg |
5173922 |
T |
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