View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_high_32 (Length: 427)
Name: NF17117_high_32
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 49085559 - 49085162
Alignment:
| Q |
19 |
acctgtaaaataaatttgaccaatgagcatctgaaatatctttaataatgtcagcctagacatgtttgagattactaaaac-acacagtaggagtttcca |
117 |
Q |
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| T |
49085559 |
acctgtaaaataaatttgagcaatgagcatctgaaatatctttaataatgtcagcctagacatgtttgagattactaaaaccacacagtaggagtttcca |
49085460 |
T |
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| Q |
118 |
aacttactaaaaacactaataccatattgataaatcaactcaaattgttccctatgataaaaatatttctagagtggttcttctcaaaagtagtgatagc |
217 |
Q |
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| T |
49085459 |
aacttactaaaaacactgataccatattgataaatcaactcaaattgttccctatgacaaaaatatttctagagtggttcttctcaaaagtagtgatagc |
49085360 |
T |
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| Q |
218 |
atggtggttgtagtacctttttgtcatagcatctgtcttttcgcttcagtcgaaactttgttagagctgcttctctttggctagtgcgatgagaactcgt |
317 |
Q |
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| T |
49085359 |
atggtggttgcagtacctttttgtcatagcatctgtcttttcgcttcagtcgaaactttgttagagctgcttctctttggctagtgcgatgagaactcgt |
49085260 |
T |
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| Q |
318 |
gtctctaagcccgtcgtggtgatcgttattcatagaactttcaaggttgttcttgcctacaatagttgaaggggcatttccatcacttacgctgccta |
415 |
Q |
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| T |
49085259 |
gtctctaagcccgtcatggtgatcgttattcatagaactttcaaggttgttcttgcctacaatagttgaaggggcatttccatcacttacgctgccta |
49085162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 8896805 - 8896889
Alignment:
| Q |
228 |
tagtacctttttgtcatagcatctgtcttttcgcttcagtcgaaactttgttagagctgcttctctttggctagtgcgatgagaa |
312 |
Q |
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|||||||||||| || ||||||| ||||||||||| | |||||||||||||||||||||||||||||| | || |||||||||| |
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| T |
8896805 |
tagtacctttttctcgaagcatctctcttttcgctttaatcgaaactttgttagagctgcttctctttgacgagagcgatgagaa |
8896889 |
T |
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