View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17117_high_34 (Length: 418)
Name: NF17117_high_34
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 45283701 - 45283312
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283701 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattat |
45283602 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283601 |
gtgccaaaactcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
45283502 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283501 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatgact |
45283402 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283401 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaa |
45283312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 45271927 - 45271530
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45271927 |
ttattctcgttgtaggtgttatcatcggtgttgttgtcgacattcgcaaaaatggtgaagaccctaaggttcaaactcaacaaagaaatcttagaattat |
45271828 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
45271827 |
gtgccaaaacgcacaagaccagaaactctgtcatgacactcttagctctgtgcgtggcgccgatgccgctgaccctaaggcatacatagcagcagccgtg |
45271728 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
45271727 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaagaaaaatggtgccaagatggctcttgatgact |
45271628 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaactgatgat |
408 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
45271627 |
gcaaagacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattgaagctgttcatgaccaaactgctgat |
45271530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 45275460 - 45275063
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | ||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275460 |
ttattctcgttgtaggtgttatcatcggtgttgttgtcgacattcacaaaaatggtaaagaccctgaggttcaaactcaacaaagaaatcttagaattat |
45275361 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45275360 |
gtgccaaaacgcacaagaccagaaactctgccatgaaactcttagctctgtgcatggcgccgatgccgctgaccctaaggcatacatagcagccgccgtg |
45275261 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45275260 |
aaggcagccactgacaatgtcatgaacgcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatgact |
45275161 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaactgatgat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||| ||| || ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45275160 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctcaaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctgat |
45275063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 45295089 - 45294699
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||| ||| |||| |||||||||||||||||| |||||| |||||||||||||| |||| | |||| |
|
|
| T |
45295089 |
ttatcctcgttgtaggtgttgccatcggcgtggtttgcgctgttcacaaaaatggtgaagaccctgaggttaaaactcaacaaagatctcttcaagttat |
45294990 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
||||||||| ||| | |||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| | || |
|
|
| T |
45294989 |
gtgccaaaatgcagatgaccaaaaactctgccatgaaacacttagctctgtgcgtggcgccgacgccgctgaccctaaggcatacatagcagccgctgta |
45294890 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
45294889 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgact |
45294790 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaac |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45294789 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaac |
45294699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 45304049 - 45303659
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||| ||| |||| |||||||||||||||||| |||||| |||||||||||||| |||| | |||| |
|
|
| T |
45304049 |
ttatcctcgttgtaggtgttgccatcggcgtggtttgcgctgttcacaaaaatggtgaagaccctgaggttaaaactcaacaaagatctcttcaagttat |
45303950 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
||||||||| ||| | |||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| | || |
|
|
| T |
45303949 |
gtgccaaaatgcagatgaccaaaaactctgccatgaaacacttagctctgtgcgtggcgccgacgccgctgaccctaaggcatacatagcagccgctgta |
45303850 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagcatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
45303849 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgact |
45303750 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaac |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45303749 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaac |
45303659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University