View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_high_36 (Length: 404)
Name: NF17117_high_36
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_36 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 13007506 - 13007909
Alignment:
| Q |
1 |
tatagcagttataggtagagagcgactagcacatgataatgtttttggatttgaatctcttatcctcaaacatacatgataatgttacgatattatgatt |
100 |
Q |
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| T |
13007506 |
tatagcagttataggtagagagcgactagcacatgataatgtttttggatttgaatctcttatcctcaaacatacatgatagtgttaggatattataatt |
13007605 |
T |
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| Q |
101 |
ccttcctcactcatcatattactatatatatcttggtttacaagtctaattgcataaactaaaaccatttgagagaaaaaagttctaagttttcaatatg |
200 |
Q |
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| T |
13007606 |
ccttcctcacttttcaacttactatatatatcttggtttacaagtctaattgcataaactaaaaccatttgagagaaaaaagttctaagttttcaatatg |
13007705 |
T |
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| Q |
201 |
aaaatgcagaaagcttggttctatgaggagtatggtcttaaggaagtccttaagctaggggacttacctattccatcccctctggaaaaccaactacttg |
300 |
Q |
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| T |
13007706 |
aaaatgcagaaagcttggttctatgaggagtatggtcctaaggaagtccttaagctaggggactttcctattccatcccctctggaaaaccaactacttg |
13007805 |
T |
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| Q |
301 |
tccaagttcatgctgctgctttgaatcctatcgattcaaagaggcgtatgcgtcctatttttccatctgattttcctgtgagtgtctgaaactctgaatt |
400 |
Q |
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| T |
13007806 |
tccaagtttatgctgctgctttgaatcctatcgattcaaagaggcgtatgcgtcctatttttccatctgattttcctgtgagtgtctgaaactctgaatt |
13007905 |
T |
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| Q |
401 |
tact |
404 |
Q |
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| T |
13007906 |
tact |
13007909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 198 - 404
Target Start/End: Complemental strand, 13119747 - 13119541
Alignment:
| Q |
198 |
atgaaaatgcagaaagcttggttctatgaggagtatggtcttaaggaagtccttaagctaggggacttacctattccatcccctctggaaaaccaactac |
297 |
Q |
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| T |
13119747 |
atgaaaatgcagaaagcttggttctatgaggagtatggtcctaaggaagtccttaagctaggggactttcctattccatcccctctggaaaaccaactac |
13119648 |
T |
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| Q |
298 |
ttgtccaagttcatgctgctgctttgaatcctatcgattcaaagaggcgtatgcgtcctatttttccatctgattttcctgtgagtgtctgaaactctga |
397 |
Q |
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| T |
13119647 |
ttgtccaagttcatgctgctgctttgaatcctattgattcaaagaggcgtatgcgtcctatttttccgtctgagtttcccgtgagtgtctgaaactctaa |
13119548 |
T |
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| Q |
398 |
atttact |
404 |
Q |
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| T |
13119547 |
atttact |
13119541 |
T |
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