View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_high_42 (Length: 383)

Name: NF17117_high_42
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_high_42
NF17117_high_42
[»] chr3 (8 HSPs)
chr3 (1-314)||(37932108-37932421)
chr3 (202-271)||(21569232-21569302)
chr3 (203-256)||(1562828-1562881)
chr3 (194-249)||(2558771-2558826)
chr3 (202-238)||(8526152-8526188)
chr3 (202-242)||(15003660-15003700)
chr3 (193-249)||(32956793-32956849)
chr3 (194-242)||(40418531-40418579)
[»] chr4 (9 HSPs)
chr4 (203-249)||(1083541-1083587)
chr4 (202-249)||(2942484-2942531)
chr4 (203-249)||(36752392-36752438)
chr4 (206-239)||(2573966-2573999)
chr4 (202-243)||(13218229-13218270)
chr4 (203-256)||(24407530-24407583)
chr4 (203-256)||(49535918-49535971)
chr4 (194-242)||(13389044-13389092)
chr4 (194-242)||(29428079-29428127)
[»] chr2 (9 HSPs)
chr2 (203-238)||(11091646-11091681)
chr2 (193-249)||(41520521-41520577)
chr2 (193-240)||(12541394-12541441)
chr2 (203-249)||(38463172-38463218)
chr2 (194-256)||(43035464-43035526)
chr2 (203-255)||(19954941-19954993)
chr2 (203-255)||(37198774-37198826)
chr2 (203-255)||(40812050-40812102)
chr2 (203-247)||(44765257-44765301)
[»] chr6 (2 HSPs)
chr6 (202-256)||(27866620-27866674)
chr6 (194-242)||(23383112-23383160)
[»] chr5 (5 HSPs)
chr5 (203-249)||(671108-671154)
chr5 (203-242)||(36185170-36185209)
chr5 (203-239)||(2025740-2025776)
chr5 (194-242)||(7670390-7670438)
chr5 (202-246)||(36105285-36105329)
[»] chr1 (4 HSPs)
chr1 (202-255)||(15104076-15104129)
chr1 (203-255)||(16084276-16084328)
chr1 (203-243)||(24254465-24254505)
chr1 (202-242)||(44836174-44836214)
[»] chr8 (7 HSPs)
chr8 (194-242)||(43129120-43129168)
chr8 (202-249)||(20150253-20150300)
chr8 (203-249)||(3728375-3728421)
chr8 (203-249)||(26732923-26732969)
chr8 (202-255)||(10006178-10006231)
chr8 (203-231)||(13634879-13634907)
chr8 (203-231)||(13735292-13735320)
[»] scaffold0002 (1 HSPs)
scaffold0002 (202-249)||(411680-411727)
[»] chr7 (3 HSPs)
chr7 (202-249)||(41708591-41708638)
chr7 (202-249)||(44327672-44327719)
chr7 (193-242)||(4227357-4227406)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 37932108 - 37932421
Alignment:
Q  1 tgtcgccttgctgaggttgatcgcaataattacccattatagttatgtgttggtggtgatagtaagttggtctctcagattnnnnnnntgagatatagtc 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  37932108 tgtcgccttgttgatgttgatcgcaataattacccattatagttatgtgttggtggtgatagtaagttggtctctcagattaaaaaaatgagatatagtc 37932207  T
Q  101 caacccaacacaatagtgaccaacgatagcaatgaccaatataagacggttacttacgtcttaggatgtgtaaatctgtattttcaattgattaaaatac 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37932208 caacccaacacaatagtgaccaacgatggcaatgaccaatataagacggttacttacgtcttaggatgtgtaaatctgtattttcaactgattaaaatac 37932307  T
Q  201 taaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttacttgagtggtgggtttatacatagatttttcatttgtaatcaaagtct 300  Q
    |||||||||||||||||||||  | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  37932308 taaaattgttaggtcagatgttgtaatcgggattcgaaccccaatacctttacttgaatggtgggtttatacatagatttgtcatttgtaatcaaagtct 37932407  T
Q  301 ttaattataaaatg 314  Q
    ||||||||||||||    
T  37932408 ttaattataaaatg 37932421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 21569302 - 21569232
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttacttgagtg-gtgggtttata 271  Q
    |||||||||||| | |||||||||| ||| ||||||||||| |||||||||| || ||| |||||||||||    
T  21569302 aaaattgttaggacggatgtcatgaccggtattcgaaccccgatacctttacatgtgtgtgtgggtttata 21569232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 1562828 - 1562881
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttacttg 256  Q
    ||||||||||||| ||||||||||||||| ||||||||||  |||||| |||||    
T  1562828 aaattgttaggtcggatgtcatgatcggggttcgaaccccggtaccttcacttg 1562881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 2558771 - 2558826
Alignment:
Q  194 aaaatactaaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    ||||| || ||||||||||||| ||||||||||||||| || ||||||| ||||||    
T  2558771 aaaatgctgaaattgttaggtcggatgtcatgatcggggtttgaaccccgatacct 2558826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 8526188 - 8526152
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaa 238  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  8526188 aaaattgttaggtcagacgtcatgatcggggttcgaa 8526152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 15003660 - 15003700
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    |||||||||||||| |||||||||| |||| ||||||||||    
T  15003660 aaaattgttaggtcggatgtcatgaccggggttcgaacccc 15003700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 32956793 - 32956849
Alignment:
Q  193 taaaatactaaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    |||||| || ||||||||||| |||| ||||||| |||| ||||||||||| |||||    
T  32956793 taaaatgctgaaattgttaggccagacgtcatgaccggggttcgaaccccagtacct 32956849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 40418579 - 40418531
Alignment:
Q  194 aaaatactaaaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    ||||| || ||||||||||| || |||||||||||||| ||||||||||    
T  40418579 aaaatgctgaaattgttaggccaaatgtcatgatcggggttcgaacccc 40418531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 1083541 - 1083587
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  1083541 aaattgttaggtcagatgtcatgatcggggttcgaaccccgatacct 1083587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 2942531 - 2942484
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  2942531 aaaattgttaggtcggatgccatgatcgggattcgaaccccgatacct 2942484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 36752392 - 36752438
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  36752392 aaattgttaggccagatgtcatgatcggggttcgaaccccgatacct 36752438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 2573966 - 2573999
Alignment:
Q  206 ttgttaggtcagatgtcatgatcgggattcgaac 239  Q
    |||||||||| |||||||||||||||||||||||    
T  2573966 ttgttaggtcggatgtcatgatcgggattcgaac 2573999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 13218229 - 13218270
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaacccca 243  Q
    |||||||||||||| |||| |||||||||| |||||||||||    
T  13218229 aaaattgttaggtcggatgccatgatcggggttcgaacccca 13218270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 24407530 - 24407583
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttacttg 256  Q
    ||||||||||||| |||| ||||| |||||||||||||||  |||||| |||||    
T  24407530 aaattgttaggtcggatgccatgaccgggattcgaaccccggtaccttcacttg 24407583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 49535918 - 49535971
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttacttg 256  Q
    ||||||||||| | |||| |||||||||| ||||||||||| ||||| ||||||    
T  49535918 aaattgttaggccggatgccatgatcggggttcgaaccccagtacctctacttg 49535971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 13389044 - 13389092
Alignment:
Q  194 aaaatactaaaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    ||||| || ||||||||||||| |||||||||| |||| ||||||||||    
T  13389044 aaaatgctgaaattgttaggtcggatgtcatgaccggggttcgaacccc 13389092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 29428079 - 29428127
Alignment:
Q  194 aaaatactaaaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    |||||||  ||||||||||| | ||||||||||||||| ||||||||||    
T  29428079 aaaataccgaaattgttaggccggatgtcatgatcggggttcgaacccc 29428127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 11091681 - 11091646
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaa 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  11091681 aaattgttaggtcagatgtcatgatcgggattcgaa 11091646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 41520521 - 41520577
Alignment:
Q  193 taaaatactaaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    |||||| || ||||||||||||||||||||||||||||| || ||| ||| ||||||    
T  41520521 taaaatgctgaaattgttaggtcagatgtcatgatcggggtttgaatcccgatacct 41520577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 12541441 - 12541394
Alignment:
Q  193 taaaatactaaaattgttaggtcagatgtcatgatcgggattcgaacc 240  Q
    ||||||||  ||||||||||||| ||||||||||||||| ||||||||    
T  12541441 taaaataccgaaattgttaggtcggatgtcatgatcggggttcgaacc 12541394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 38463172 - 38463218
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    ||||||||||||| ||||| ||||||||| |||||||||| ||||||    
T  38463172 aaattgttaggtcggatgttatgatcggggttcgaaccccgatacct 38463218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 43035464 - 43035526
Alignment:
Q  194 aaaatactaaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttacttg 256  Q
    |||||||  ||||||||||| | ||||||||||||||| ||||||||||  ||||| ||||||    
T  43035464 aaaataccgaaattgttaggccggatgtcatgatcggggttcgaaccccggtacctctacttg 43035526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 19954993 - 19954941
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttactt 255  Q
    ||||||||| ||| ||||||||||||||  |||||||||| |||||| |||||    
T  19954993 aaattgttaagtcggatgtcatgatcggagttcgaaccccgatacctctactt 19954941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 37198826 - 37198774
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttactt 255  Q
    ||||||||||| |||||| |||||||||| ||||||||||  |||||| ||||    
T  37198826 aaattgttaggccagatggcatgatcggggttcgaaccccggtaccttcactt 37198774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 40812050 - 40812102
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttactt 255  Q
    ||||||||||||| |||||||||| |||| ||||||||||  |||||| ||||    
T  40812050 aaattgttaggtcggatgtcatgaccggggttcgaaccccggtaccttcactt 40812102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 44765257 - 44765301
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatac 247  Q
    ||||||||||||  ||||||||||||||| |||||||||| ||||    
T  44765257 aaattgttaggttggatgtcatgatcggggttcgaaccccgatac 44765301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 27866620 - 27866674
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttacttg 256  Q
    |||||||||||| | |||| |||||||||| ||||||||||||||||| ||||||    
T  27866620 aaaattgttaggccggatgccatgatcggggttcgaaccccaatacctctacttg 27866674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 23383160 - 23383112
Alignment:
Q  194 aaaatactaaaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    ||||| || |||||||||||||||||||||| |||||| ||||||||||    
T  23383160 aaaatgctgaaattgttaggtcagatgtcataatcggggttcgaacccc 23383112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 671154 - 671108
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  671154 aaattgttaggtcggatgtcatgatcggggttcgaaccccgatacct 671108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 36185170 - 36185209
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  36185170 aaattgttaggtcagatatcatgatcggggttcgaacccc 36185209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 2025776 - 2025740
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaac 239  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  2025776 aaattgttaggtcggatgtcatgatcggggttcgaac 2025740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 7670390 - 7670438
Alignment:
Q  194 aaaatactaaaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    ||||| ||||||||||||| || ||| ||||||||||| ||||||||||    
T  7670390 aaaatgctaaaattgttagatcggatatcatgatcggggttcgaacccc 7670438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 36105329 - 36105285
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaata 246  Q
    |||||||| ||||| ||||||  ||||||||||||||||||||||    
T  36105329 aaaattgtgaggtcggatgtcgcgatcgggattcgaaccccaata 36105285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 15104076 - 15104129
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttactt 255  Q
    |||||||||||| | ||||||||||||||| |||||||||| |||||| |||||    
T  15104076 aaaattgttaggccggatgtcatgatcggggttcgaaccccgatacctctactt 15104129  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 16084328 - 16084276
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttactt 255  Q
    ||||||||||| | |||| |||||||||| || ||||||||||||||| ||||    
T  16084328 aaattgttaggccggatgccatgatcggggtttgaaccccaataccttcactt 16084276  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 24254505 - 24254465
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaacccca 243  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  24254505 aaattgttaggctagatgtcatgatcggggttcgaacccca 24254465  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 44836214 - 44836174
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    |||||||||||||| || |||||||||||| ||||||||||    
T  44836214 aaaattgttaggtcggacgtcatgatcggggttcgaacccc 44836174  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 43129120 - 43129168
Alignment:
Q  194 aaaatactaaaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    |||||||  ||||||||||||| |||| |||||||||||||||||||||    
T  43129120 aaaataccgaaattgttaggtcggatgccatgatcgggattcgaacccc 43129168  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 20150253 - 20150300
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    |||||||||||| | |||||||||| ||| ||||||||||||||||||    
T  20150253 aaaattgttaggccggatgtcatgaccggaattcgaaccccaatacct 20150300  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 3728421 - 3728375
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    ||||||||||||| ||||||||||| ||| |||||||||| ||||||    
T  3728421 aaattgttaggtcggatgtcatgattggggttcgaaccccgatacct 3728375  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 26732969 - 26732923
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    |||||| |||||| ||||||||||||||| ||||||||||| |||||    
T  26732969 aaattgctaggtcggatgtcatgatcggggttcgaaccccagtacct 26732923  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 10006178 - 10006231
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacctttactt 255  Q
    |||||||||||  | ||||||||||||||| ||||||||||| |||||| ||||    
T  10006178 aaaattgttagaccggatgtcatgatcggggttcgaaccccagtaccttcactt 10006231  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 13634879 - 13634907
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcggg 231  Q
    |||||||||||||||||||||||||||||    
T  13634879 aaattgttaggtcagatgtcatgatcggg 13634907  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 13735292 - 13735320
Alignment:
Q  203 aaattgttaggtcagatgtcatgatcggg 231  Q
    |||||||||||||||||||||||||||||    
T  13735292 aaattgttaggtcagatgtcatgatcggg 13735320  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 411680 - 411727
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    |||||||||||||| |||||||||| |||| ||||||||||| |||||    
T  411680 aaaattgttaggtcggatgtcatgaccggggttcgaaccccagtacct 411727  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 41708638 - 41708591
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    |||||||||||||| ||||| ||||||||| |||||||||| ||||||    
T  41708638 aaaattgttaggtcggatgttatgatcggggttcgaaccccgatacct 41708591  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 44327672 - 44327719
Alignment:
Q  202 aaaattgttaggtcagatgtcatgatcgggattcgaaccccaatacct 249  Q
    |||||||||||| | |||||||||| ||| ||||||||||||||||||    
T  44327672 aaaattgttaggccggatgtcatgaccggaattcgaaccccaatacct 44327719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 4227357 - 4227406
Alignment:
Q  193 taaaatactaaaattgttaggtcagatgtcatgatcgggattcgaacccc 242  Q
    ||||||||  ||||||||||||| |||| |||||||||| ||||||||||    
T  4227357 taaaataccgaaattgttaggtcggatgccatgatcggggttcgaacccc 4227406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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