View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_high_5 (Length: 669)
Name: NF17117_high_5
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 13868332 - 13868472
Alignment:
| Q |
18 |
aatcctcgtgttacttaattttgaaaacattccatgtgacaatattggaaatgaaaaatctgatttccacttatgttgatttatgcatactactgcttgt |
117 |
Q |
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| T |
13868332 |
aatcctcgtgttacttaattttgaaaacattcaatgtgacaatattggaaatgaaaaatctgatttccacttatgttgatttatgcatactactgcttgt |
13868431 |
T |
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| Q |
118 |
gacagaattccttaaagcataactaaacctatcaaacctgg |
158 |
Q |
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| T |
13868432 |
gacagaattccttaaagcataactaaacctatcaaacctgg |
13868472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 404 - 546
Target Start/End: Original strand, 13869898 - 13870037
Alignment:
| Q |
404 |
taatatgtaaccaaccaagcaccttaattagaccataccttgaaggcaaactgacaatgaaggaaaatatgtgaggagatttcagccctcagattgcaga |
503 |
Q |
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| T |
13869898 |
taatatgtaaccaaccaagcacctta----gaccataccttgaaggcaaactgacaatgaaggaaaatatgtgaggagatttcagccctcagattgcaga |
13869993 |
T |
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| Q |
504 |
aaacacaattcactgagtcatctaaaggc-aaactctcctcctt |
546 |
Q |
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| T |
13869994 |
aaacacaattcactgagtcatctaaaggcaaaactctcctcctt |
13870037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 543 - 669
Target Start/End: Original strand, 13870096 - 13870222
Alignment:
| Q |
543 |
cctttgtaggagccaggcttttccaaacggacccaaacaccctttctttggtaccacacaattcctctctcggtatcaacaaattctccaagatcttgta |
642 |
Q |
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| T |
13870096 |
cctttgtagaagccaggcttttccacacggacccaaacaccctttctttggtaccacacaattcctctctcggtatcaacaaattctccaagatcttgta |
13870195 |
T |
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| Q |
643 |
ggttgaactcaccataaaactacctgt |
669 |
Q |
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| T |
13870196 |
ggttgaactcaccataaaactacctgt |
13870222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 209 - 397
Target Start/End: Original strand, 13872055 - 13872242
Alignment:
| Q |
209 |
atgccagagaaagagaattacaaggaacttaacaagtgaggggataacttgataat-ccataaaacagttaaaaatgaaatgatgttatcaatgctatga |
307 |
Q |
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||||| |||||||| |||||||| ||||||||||||||||| ||| |||||||| | |||||||||||||||||||||||| ||| ||||||| |||||| |
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| T |
13872055 |
atgccggagaaagacaattacaaagaacttaacaagtgaggtgatcacttgatagttccataaaacagttaaaaatgaaattatgctatcaatactatga |
13872154 |
T |
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| Q |
308 |
tttgataagccgacaacttacgacaacagaatgacaattaccaagaacttcaacaagtgtagtgatcacttcccataacaacacaattaa |
397 |
Q |
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| T |
13872155 |
tttgacaatccgacaagttacggcaacagaatgacaattaccaagaacttcaacaagtgtagtgatcacttcctata--aacacaattaa |
13872242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 264 - 397
Target Start/End: Original strand, 13884405 - 13884534
Alignment:
| Q |
264 |
tccataaaacagttaaaaatgaaatgatgttatcaatgctatgatttgataagccgacaacttacgacaacagaatgacaattaccaagaacttcaacaa |
363 |
Q |
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| T |
13884405 |
tccataaaacagttaaag--gaaattatgctatcaaaactaagatttgacaaactaacaacttacggcaccagaatgacaattaccaagaacttcaacaa |
13884502 |
T |
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| Q |
364 |
gtgtagtgatcacttcccataacaacacaattaa |
397 |
Q |
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| T |
13884503 |
gtgtagtgatcacttcccata--aacacaattaa |
13884534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 13874401 - 13874495
Alignment:
| Q |
225 |
attacaaggaacttaacaagtgaggggataacttgataatcca-taaaacagttaaaaatgaaatgatgttatcaatgctatgatttgataagcc |
318 |
Q |
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| T |
13874401 |
attacaaagaacttaacaagtgaggggatcacttgatagtcccgtaaaaccattgaaaattaaatgatgttatcaatgctatgatttgacaagcc |
13874495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 12957723 - 12957664
Alignment:
| Q |
336 |
gaatgacaattaccaagaacttcaacaagtgtagtgatcacttcccataacaacacaattaa |
397 |
Q |
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| T |
12957723 |
gaatgacaattaccaagaacttcaaaaagtgtagtaatcacttcccata--aacacaattaa |
12957664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 13882533 - 13882613
Alignment:
| Q |
215 |
gagaaagagaattacaaggaacttaacaagtgaggggataacttgataat-ccataaaacagttaaaaatgaaatgatgtt |
294 |
Q |
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| T |
13882533 |
gagaaagacaattacaaagaacttaacaagtgagaggatcacagtatagtcccataaaacagttaaaaatgaaatgatgtt |
13882613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 378
Target Start/End: Complemental strand, 14392653 - 14392504
Alignment:
| Q |
228 |
acaaggaacttaacaagtgaggggataacttgataat-ccataaaacagttaaaaatgaaatgatgttatcaatgctatgatttgataagccgacaactt |
326 |
Q |
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| T |
14392653 |
acaatgaactttacaagtgaggggatcacttgatagtcccataaaactgct-aaaatgaactgatgttgtcaatgcttttatttgagaagtcaacagctt |
14392555 |
T |
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| Q |
327 |
acgacaacagaatgacaattaccaagaacttcaacaagtgtagtgatcactt |
378 |
Q |
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| T |
14392554 |
attgcaataaaatgacgattacaaagaacttc-acaaatgtggtgatcactt |
14392504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 16025058 - 16025180
Alignment:
| Q |
205 |
agtgatgccagagaaagagaattacaaggaacttaacaagtgaggggataacttgataatcc-ataaaacagttaaaaatgaaatgatgttatcaatgct |
303 |
Q |
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| T |
16025058 |
agtgatgccggagaaagacaattataaagaacttcacaagtaaatcgatcatttgatagtcccataaaacagttaaaaatgaaatggtgctatcaaggtt |
16025157 |
T |
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| Q |
304 |
atgatttgataagccgacaactt |
326 |
Q |
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||||||| ||||| ||||||| |
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| T |
16025158 |
ctgatttgccaagccaacaactt |
16025180 |
T |
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