View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_high_50 (Length: 340)
Name: NF17117_high_50
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 5563566 - 5563392
Alignment:
| Q |
128 |
taagaaattaactaaaaagtatgtnnnnnnnn-gaaatagaaagtactttccttggttgttgaagcaagatcctgagtgcagagaaagacttgagcaatt |
226 |
Q |
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| T |
5563566 |
taagaaattaactaaaaagtatgtaaaaaaaaagaaatagaaagtactttccttgtttgttgaagcaagatcctgagtgcagagaaagacttgagcaatt |
5563467 |
T |
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| Q |
227 |
tttccatcagctctccttccttgttgaagaacttgaagagtgtgttacaccagctcaaaatggtctctacgatcc |
301 |
Q |
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| T |
5563466 |
tttccatcagctctccttccttgttgaagaacttgaagagtgtgttacaccagctcaaaatggtctctacgatcc |
5563392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 5563675 - 5563629
Alignment:
| Q |
20 |
gaatgaagagaaaaggagcaaaatgagaaaggaaatgacaaagaccc |
66 |
Q |
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| T |
5563675 |
gaatgaagagaaaaggagcaaaatgagaaaggaaatgacaaagaccc |
5563629 |
T |
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