View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_high_61 (Length: 298)
Name: NF17117_high_61
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 39 - 297
Target Start/End: Complemental strand, 54533087 - 54532839
Alignment:
| Q |
39 |
actgcaggtatagacgataataataagaaaaaatgcaaaatctcaagtgcatcttaaaatgggtagttgacttcgttaccacgatgacaataatttgtgg |
138 |
Q |
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| T |
54533087 |
actgcaggtatggacgataataataagaaaa--tgcaaaatctcaagtacatcttaaaatggataggtgacttcgttaccacgatgacaataatttgtgg |
54532990 |
T |
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| Q |
139 |
tctaaccagcgtaccatttaggaaggacttaatcaagtttgaagagaataagagaatattgattccgtgattgaaactgcggtttactcaacttttgaat |
238 |
Q |
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| T |
54532989 |
tccaaccagcctaccatttaggaaggacttaatcaagttt--------taagagaatatcgattccgtgattgaagctgcggtttactcagcttttggat |
54532898 |
T |
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| Q |
239 |
tggttgttacgggaatgtttaattggttggcacatgcatctattgaacgcagagtaaac |
297 |
Q |
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| T |
54532897 |
tcgttgttacgggagtgtttgattggttggcacatgcatctattgaacgcagagtaaac |
54532839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 69 - 298
Target Start/End: Original strand, 54532582 - 54532807
Alignment:
| Q |
69 |
aaatgcaaaatctcaagtgcatcttaaaatgggtagttgacttcgttaccacgatgacaataatttgtggtctaaccagcgtacc----atttaggaagg |
164 |
Q |
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| T |
54532582 |
aaatgcaaagtctcaagtacatcttgaaatggacaggtggcttcgttaccacactgacaataatttgtggtttaaccagcctgcctatcatttaggaagg |
54532681 |
T |
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| Q |
165 |
acttaatcaagtttgaagagaataagagaatattgattccgtgattgaaactgcggtttactcaacttttgaattggttgttacgggaatgtttaattgg |
264 |
Q |
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| T |
54532682 |
acttaatcaagtttgaagagaata--------tcgattccgtgattgaaactgcggtttactcaacttttgaattggttgttacgggaatgtttgattgg |
54532773 |
T |
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| Q |
265 |
ttggcacatgcatctattgaacgcagagtaaacc |
298 |
Q |
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| T |
54532774 |
ttggcacatgcatctattgaacgcagagtaaacc |
54532807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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