View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_high_63 (Length: 297)

Name: NF17117_high_63
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_high_63
NF17117_high_63
[»] chr1 (1 HSPs)
chr1 (12-297)||(16271601-16271863)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 16271601 - 16271863
Alignment:
Q  12 aagcaaaggtatagaataatatatataaagaacaaattgtagaatacggtgttgatagtaattcagtaacgggactgcaaaccacataattactgtttat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||||    
T  16271601 aagcaaaggtatagaataatatatataaagaacaaattgtagaatacggtgttgatagtaat---------------------acataattactgtttat 16271679  T
Q  112 ttaacctatgaaaagtccaatatttatttaaatgaaaattttctcataggcccctccatttgctctcaggcccttcgaaatgataaaaaatacccccctc 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16271680 ttaacctatgaaa-gtccaatatttatttaaatgaaaattttctcataggcccctccatttgctctcaggcccttcgaaatgataaaa-atacccccctc 16271777  T
Q  212 atgagttagaattcgaacccaagtactctaacttccactctctcaagtttgaagcgtaattcttgcattgcttttacttatatatc 297  Q
    |||||||| ||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  16271778 atgagttacaattcgaacccaagtgctgtaacttccactctctcaagttcgaatcgtaattcttgcattgcttttacttatatatc 16271863  T

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