View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_high_65 (Length: 293)
Name: NF17117_high_65
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_65 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 42234101 - 42233837
Alignment:
| Q |
19 |
gcaagatcatgtaaccttccaaagaacatatacttcaattcaacagaaaactccttcacgtcgtgggcccgtgtannnnnnnnnnnnnnnnnnnngttgc |
118 |
Q |
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| T |
42234101 |
gcaagatcatgtaaccttccaaagaacatatacttcaattcaacagaaaactccttcacgtcgtgggcccgtgtatttgtttttttttt------gttgc |
42234008 |
T |
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| Q |
119 |
cttttctagggaataattgtttttctgtttcacctatccagctattgccaacaaaaatttaaatatgatatgagcatattcatgtgtttataaatagatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42234007 |
cttttctagggaataattgtttttctgtttcacctatccatctattgccaacaaaaatttaaatatgatatgagcatattcatgtgtttataaatagatg |
42233908 |
T |
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| Q |
219 |
taatctttactttgcaagagtgtgtcgtgtgctcaacccaaatttgaagataaatattagagcctatgcta |
289 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42233907 |
tagtctttactttgcaagagtgtgtcgtgtgctcaacccaaatttgaagataaatattagagcctatgcta |
42233837 |
T |
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