View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_high_77 (Length: 255)
Name: NF17117_high_77
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_high_77 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 53295256 - 53295113
Alignment:
| Q |
79 |
gttgcgttaatcaatattcttacatcnnnnnnngttacaattattatttatataattaggacaagaatgcttgattagttttttctccagaaggtgtgaa |
178 |
Q |
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| T |
53295256 |
gttgcgttaatcaatattcttacatcaaaaaaagttacaattattatttatataattaggacaagaatgcttgattagttttttctccagaaggtgtgaa |
53295157 |
T |
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| Q |
179 |
attaaaaagtattacacacaaacaaaaatttcaaggttttgggggc |
224 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53295156 |
attaaaaag--ttacacacaaacaaaaatttcaaggttttgggggc |
53295113 |
T |
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