View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_high_95 (Length: 216)

Name: NF17117_high_95
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_high_95
NF17117_high_95
[»] chr6 (4 HSPs)
chr6 (15-201)||(34231718-34231898)
chr6 (159-198)||(14620952-14620991)
chr6 (157-193)||(8304745-8304781)
chr6 (159-195)||(26184708-26184744)
[»] chr2 (3 HSPs)
chr2 (158-204)||(3206746-3206792)
chr2 (157-200)||(7736719-7736762)
chr2 (159-202)||(20066819-20066862)
[»] chr5 (5 HSPs)
chr5 (157-204)||(17046918-17046965)
chr5 (157-204)||(34944251-34944298)
chr5 (158-204)||(6628357-6628403)
chr5 (159-204)||(34943768-34943813)
chr5 (158-198)||(13708031-13708071)
[»] chr4 (5 HSPs)
chr4 (173-204)||(39666577-39666608)
chr4 (158-204)||(30043548-30043594)
chr4 (159-204)||(8362092-8362137)
chr4 (159-204)||(11190994-11191039)
chr4 (159-200)||(17139560-17139601)
[»] chr7 (2 HSPs)
chr7 (162-200)||(31873338-31873376)
chr7 (158-198)||(121855-121895)
[»] chr3 (2 HSPs)
chr3 (158-204)||(36346303-36346349)
chr3 (158-198)||(43568859-43568899)
[»] chr1 (2 HSPs)
chr1 (162-204)||(10974815-10974857)
chr1 (157-199)||(51320691-51320733)
[»] chr8 (2 HSPs)
chr8 (159-191)||(4866369-4866401)
chr8 (162-198)||(5304244-5304280)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 34231898 - 34231718
Alignment:
Q  15 agagagagttcaaaagagagtgttgctatcattactttgatgaaacaatgtatacatgtgaattattcaatgaagataatataagaacttatataagata 114  Q
    |||||| |||||||||| ||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34231898 agagagtgttcaaaagatagtgttgctatcat------gatgaaacaatgtatacatgtgaattattcaatgaagataatataagaacttatataagata 34231805  T
Q  115 tgaactcacannnnnnnnnnnnagtacaaggtttaagagtggttgaaaattgttgttcacacatattataaggctgaaaaacacata 201  Q
    ||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34231804 tgaactcacattttttctttttagtacaaggtttaagagtggttgaaaattgttgttcacacatattataaggctgaaaaacacata 34231718  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 14620991 - 14620952
Alignment:
Q  159 gaaaattgttgttcacacatattataaggctgaaaaacac 198  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  14620991 gaaaaatgttgttcacacatagtataaggctgaaaaacac 14620952  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 8304781 - 8304745
Alignment:
Q  157 ttgaaaattgttgttcacacatattataaggctgaaa 193  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  8304781 ttgaaatttgttgttcacacatatcataaggctgaaa 8304745  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 26184744 - 26184708
Alignment:
Q  159 gaaaattgttgttcacacatattataaggctgaaaaa 195  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  26184744 gaaaattgttgttcacacatgttatagggctgaaaaa 26184708  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 3206746 - 3206792
Alignment:
Q  158 tgaaaattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  3206746 tgaaaattgatgttcacacatatcataaggctgaaacacacatataa 3206792  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 7736719 - 7736762
Alignment:
Q  157 ttgaaaattgttgttcacacatattataaggctgaaaaacacat 200  Q
    ||||||||||||||| |||||||| ||| |||||||||||||||    
T  7736719 ttgaaaattgttgtttacacatatgatagggctgaaaaacacat 7736762  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 20066819 - 20066862
Alignment:
Q  159 gaaaattgttgttcacacatattataaggctgaaaaacacatat 202  Q
    |||||||||||||||||||||| | |||||||||| ||||||||    
T  20066819 gaaaattgttgttcacacatataagaaggctgaaacacacatat 20066862  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 17046918 - 17046965
Alignment:
Q  157 ttgaaaattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    |||||||||||||||||||||||| | || |||||||||||| |||||    
T  17046918 ttgaaaattgttgttcacacatatgaaaaagctgaaaaacacctataa 17046965  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 34944298 - 34944251
Alignment:
Q  157 ttgaaaattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    ||||||||||||||| |||||| | |||||||||||| ||||||||||    
T  34944298 ttgaaaattgttgttaacacatttgataaggctgaaacacacatataa 34944251  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 6628403 - 6628357
Alignment:
Q  158 tgaaaattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    |||||||||||||||||||||||   |||||||||| ||||||||||    
T  6628403 tgaaaattgttgttcacacatatgcaaaggctgaaacacacatataa 6628357  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 34943768 - 34943813
Alignment:
Q  159 gaaaattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    ||||||||||||||||||| || | |||||||||| ||||||||||    
T  34943768 gaaaattgttgttcacacacataagaaggctgaaacacacatataa 34943813  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 13708071 - 13708031
Alignment:
Q  158 tgaaaattgttgttcacacatattataaggctgaaaaacac 198  Q
    ||||||||||||||||||||| ||||| |||||| ||||||    
T  13708071 tgaaaattgttgttcacacatgttatagggctgagaaacac 13708031  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 204
Target Start/End: Complemental strand, 39666608 - 39666577
Alignment:
Q  173 acacatattataaggctgaaaaacacatataa 204  Q
    ||||||||||||||||||||||||||||||||    
T  39666608 acacatattataaggctgaaaaacacatataa 39666577  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 30043594 - 30043548
Alignment:
Q  158 tgaaaattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    ||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  30043594 tgaaaattgttgttcacacaagttataacgctgaaacacacatataa 30043548  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 8362137 - 8362092
Alignment:
Q  159 gaaaattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    |||||||||||||||||| | |||||||||||||| |||| |||||    
T  8362137 gaaaattgttgttcacacttgttataaggctgaaacacacctataa 8362092  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 11190994 - 11191039
Alignment:
Q  159 gaaaattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    ||||||||||||  |||||| ||||||||||||||||||| |||||    
T  11190994 gaaaattgttgtatacacatgttataaggctgaaaaacacgtataa 11191039  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 17139560 - 17139601
Alignment:
Q  159 gaaaattgttgttcacacatattataaggctgaaaaacacat 200  Q
    |||||||||||||||||||||| |||||| ||| ||||||||    
T  17139560 gaaaattgttgttcacacatatcataaggttgagaaacacat 17139601  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 31873338 - 31873376
Alignment:
Q  162 aattgttgttcacacatattataaggctgaaaaacacat 200  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  31873338 aattgttgttgacacatatgataaggctgaaaaacacat 31873376  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 121895 - 121855
Alignment:
Q  158 tgaaaattgttgttcacacatattataaggctgaaaaacac 198  Q
    |||||||||||||| ||||||| |||| |||||||||||||    
T  121895 tgaaaattgttgttgacacatagtatagggctgaaaaacac 121855  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 36346303 - 36346349
Alignment:
Q  158 tgaaaattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    ||||||||| |||| |||||||| ||| |||||||||||||||||||    
T  36346303 tgaaaattgctgttgacacatataatagggctgaaaaacacatataa 36346349  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 43568859 - 43568899
Alignment:
Q  158 tgaaaattgttgttcacacatattataaggctgaaaaacac 198  Q
    |||||||||||||| |||||| |||||||||||| ||||||    
T  43568859 tgaaaattgttgttgacacattttataaggctgagaaacac 43568899  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 10974857 - 10974815
Alignment:
Q  162 aattgttgttcacacatattataaggctgaaaaacacatataa 204  Q
    |||||||||| |||||||| ||| |||||||||||||||||||    
T  10974857 aattgttgttgacacatatgatagggctgaaaaacacatataa 10974815  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 51320691 - 51320733
Alignment:
Q  157 ttgaaaattgttgttcacacatattataaggctgaaaaacaca 199  Q
    |||||||||||||||||||| | |||||||||||||| |||||    
T  51320691 ttgaaaattgttgttcacaccttttataaggctgaaacacaca 51320733  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 4866369 - 4866401
Alignment:
Q  159 gaaaattgttgttcacacatattataaggctga 191  Q
    |||||||||||||||||||||| ||||||||||    
T  4866369 gaaaattgttgttcacacatatcataaggctga 4866401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 5304280 - 5304244
Alignment:
Q  162 aattgttgttcacacatattataaggctgaaaaacac 198  Q
    ||||||||||||||||| | |||||||||||||||||    
T  5304280 aattgttgttcacacatttgataaggctgaaaaacac 5304244  T

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