View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_high_97 (Length: 215)

Name: NF17117_high_97
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_high_97
NF17117_high_97
[»] chr8 (3 HSPs)
chr8 (1-114)||(42233507-42233621)
chr8 (151-214)||(17521890-17521953)
chr8 (151-214)||(29316252-29316314)
[»] chr5 (6 HSPs)
chr5 (149-215)||(4126948-4127014)
chr5 (149-215)||(4126298-4126364)
chr5 (157-215)||(4560049-4560107)
chr5 (112-190)||(509432-509503)
chr5 (114-149)||(19083960-19083995)
chr5 (113-149)||(30335803-30335839)
[»] chr7 (1 HSPs)
chr7 (148-215)||(3777849-3777916)
[»] chr3 (3 HSPs)
chr3 (160-215)||(27002396-27002451)
chr3 (154-215)||(27001744-27001805)
chr3 (115-155)||(27958884-27958924)
[»] chr2 (1 HSPs)
chr2 (115-149)||(16147669-16147703)
[»] chr1 (2 HSPs)
chr1 (153-203)||(44006230-44006280)
chr1 (149-181)||(44005710-44005742)
[»] chr4 (1 HSPs)
chr4 (112-149)||(22681978-22682015)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 42233621 - 42233507
Alignment:
Q  1 atttttcttcattgtacaaaatcaccacaaatgaagaaactaaaata-ggtattggagagagattttgaaggattttttaggctcacataaaatcttcaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42233621 atttttcttcattgtacaaaatcaccacaaatgaagaaactaaaaaaaggtattggagagagattttggaggattttttaggctcacataaaatcttcaa 42233522  T
Q  100 actcaatttatgtaa 114  Q
    |  ||||||||||||    
T  42233521 atccaatttatgtaa 42233507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 17521953 - 17521890
Alignment:
Q  151 aggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaat 214  Q
    ||||||| |||||||||| ||||||||||||||||||||  |||||| |||||||||| |||||    
T  17521953 aggataagcagtaattaaagcacccactattataggtttctccaaattttattaatgagcaaat 17521890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 29316314 - 29316252
Alignment:
Q  151 aggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaat 214  Q
    |||||||| |||||||||| ||||| || ||||||||||  | |||||||||||||||||||||    
T  29316314 aggataaagagtaattaatacacccgct-ttataggtttctctaaatcttattaatgaccaaat 29316252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 4127014 - 4126948
Alignment:
Q  149 acaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatc 215  Q
    ||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  4127014 acaggataagcagtaattaatgcacccactattataggttttttcaaatcttattaatgaccaaatc 4126948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 4126298 - 4126364
Alignment:
Q  149 acaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatc 215  Q
    |||||||||||||||||||| |||||||||||||||| |||  ||||||||||||||||| ||||||    
T  4126298 acaggataaacagtaattaaagcacccactattatagatttctccaaatcttattaatgagcaaatc 4126364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 4560049 - 4560107
Alignment:
Q  157 aacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatc 215  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  4560049 aacagtaattaatgcacccactattataggtttctctaaatcttattaatgaccaaatc 4560107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 509503 - 509432
Alignment:
Q  112 taagggtttttctaacccatgcaagattgcacaggatacaggataaacagtaattaatgcacccactattataggtttt 190  Q
    |||| ||||||||||||| |||||||||||| ||||||       | |||||||||||||||||||| |||||||||||    
T  509503 taagagtttttctaacccgtgcaagattgcaaaggata-------agcagtaattaatgcacccactgttataggtttt 509432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 149
Target Start/End: Complemental strand, 19083995 - 19083960
Alignment:
Q  114 agggtttttctaacccatgcaagattgcacaggata 149  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19083995 agggtttttctaacctatgcaagattgcacaggata 19083960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 30335803 - 30335839
Alignment:
Q  113 aagggtttttctaacccatgcaagattgcacaggata 149  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30335803 aagggtttttctaacctgtgcaagattgcacaggata 30335839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 3777916 - 3777849
Alignment:
Q  148 tacaggataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatc 215  Q
    |||||||||| ||||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
T  3777916 tacaggataagcagtaattaatgcacccactattgtaggtttctccaaatcttaataatgaccaaatc 3777849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 27002451 - 27002396
Alignment:
Q  160 agtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatc 215  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  27002451 agtaattaatgcacccactattataggtttttccaaattttattaatgaccaaatc 27002396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 27001744 - 27001805
Alignment:
Q  154 ataaacagtaattaatgcacccactattataggttttcccaaatcttattaatgaccaaatc 215  Q
    |||| |||||||||| |||||||||||||||| |||  ||||||||||||||||| ||||||    
T  27001744 ataagcagtaattaaagcacccactattatagatttctccaaatcttattaatgagcaaatc 27001805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 27958884 - 27958924
Alignment:
Q  115 gggtttttctaacccatgcaagattgcacaggatacaggat 155  Q
    ||||||||||||||  ||||||||||||||||||| |||||    
T  27958884 gggtttttctaacctgtgcaagattgcacaggataaaggat 27958924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 16147669 - 16147703
Alignment:
Q  115 gggtttttctaacccatgcaagattgcacaggata 149  Q
    |||||||||||||| ||||||||||||||||||||    
T  16147669 gggtttttctaacctatgcaagattgcacaggata 16147703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 44006280 - 44006230
Alignment:
Q  153 gataaacagtaattaatgcacccactattataggttttcccaaatcttatt 203  Q
    ||||| |||||||||| ||||||||||||||| ||||  ||||||||||||    
T  44006280 gataagcagtaattaaagcacccactattataagtttctccaaatcttatt 44006230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 44005710 - 44005742
Alignment:
Q  149 acaggataaacagtaattaatgcacccactatt 181  Q
    |||||||||| ||||||||||||||||||||||    
T  44005710 acaggataaagagtaattaatgcacccactatt 44005742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 22681978 - 22682015
Alignment:
Q  112 taagggtttttctaacccatgcaagattgcacaggata 149  Q
    |||||||||||||||||  |||||||||||||||||||    
T  22681978 taagggtttttctaacctgtgcaagattgcacaggata 22682015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University