View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_low_10 (Length: 557)

Name: NF17117_low_10
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_low_10
NF17117_low_10
[»] chr6 (5 HSPs)
chr6 (17-549)||(17301943-17302475)
chr6 (99-271)||(10780844-10781016)
chr6 (428-470)||(7086802-7086844)
chr6 (420-470)||(24833243-24833293)
chr6 (428-468)||(9658886-9658926)
[»] chr2 (5 HSPs)
chr2 (96-213)||(7960909-7961026)
chr2 (422-470)||(2665898-2665946)
chr2 (428-467)||(31018597-31018636)
chr2 (420-470)||(34784992-34785042)
chr2 (427-467)||(25846747-25846787)
[»] chr1 (9 HSPs)
chr1 (427-490)||(12713317-12713380)
chr1 (427-490)||(12717408-12717471)
chr1 (427-490)||(12707863-12707926)
chr1 (422-470)||(14332652-14332700)
chr1 (395-465)||(22881631-22881702)
chr1 (415-470)||(35999332-35999387)
chr1 (428-468)||(15641042-15641082)
chr1 (420-472)||(34298435-34298487)
chr1 (428-472)||(40181878-40181922)
[»] chr7 (6 HSPs)
chr7 (428-490)||(8160423-8160485)
chr7 (428-469)||(27093424-27093465)
chr7 (428-469)||(27184836-27184877)
chr7 (420-469)||(41020495-41020544)
chr7 (429-470)||(1433462-1433503)
chr7 (422-466)||(37870894-37870938)
[»] chr5 (3 HSPs)
chr5 (420-465)||(33178024-33178069)
chr5 (427-469)||(35017043-35017085)
chr5 (421-450)||(6770543-6770572)
[»] chr3 (4 HSPs)
chr3 (428-476)||(11313804-11313852)
chr3 (428-470)||(49505164-49505206)
chr3 (429-470)||(32804550-32804591)
chr3 (420-465)||(55401074-55401119)
[»] chr8 (7 HSPs)
chr8 (420-467)||(15816142-15816189)
chr8 (420-470)||(4786348-4786398)
chr8 (428-470)||(14731719-14731761)
chr8 (431-469)||(38079009-38079047)
chr8 (428-470)||(39954289-39954331)
chr8 (429-470)||(11803267-11803308)
chr8 (420-472)||(3677785-3677837)
[»] chr4 (8 HSPs)
chr4 (420-467)||(12895287-12895334)
chr4 (431-470)||(13134460-13134499)
chr4 (420-463)||(17446070-17446113)
chr4 (429-478)||(903930-903979)
chr4 (420-465)||(27706192-27706237)
chr4 (124-172)||(10803306-10803354)
chr4 (420-468)||(21539879-21539927)
chr4 (422-470)||(36635325-36635373)
[»] scaffold0020 (1 HSPs)
scaffold0020 (428-470)||(135322-135364)
[»] scaffold0039 (1 HSPs)
scaffold0039 (420-468)||(84985-85033)
[»] scaffold0011 (1 HSPs)
scaffold0011 (421-465)||(17764-17808)


Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 549
Target Start/End: Original strand, 17301943 - 17302475
Alignment:
Q  17 caaggttggggagtttgaacatgctttcgatgatgctatggatatgattcgtgtaggttgcgtccctactcttagtacaatgaaaaaacttgtgaatggg 116  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17301943 caagattggggagtttgaacatgctttcgacgatgctatggatatgattcgtgtaggttgcgtccctactcttactacaatgaaaaaacttgtgaatggg 17302042  T
Q  117 cttgttcgtgtttcgaaggttgatgatgctaaaaagcttgttgagaaaatcaaggacaagttttctgaaaacggagacaagtggggtgaacttgaagaga 216  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17302043 cttgtttgtgtttcgaaggttgatgatgctaaaaagcttgttgagaaaatcaaggacaagttttctgaaaacggggacaagtggggtgaacttgaagaga 17302142  T
Q  217 gtttgcctcaggaatcttagaagattgttgtatactgtcgttgtgtgctttatttgtcattttggtaacttttctaaggaactgatgaatcatgaagctt 316  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17302143 gtttgcctcaggaatcttaaaagattgttgtatactgtcgttgtgtgctttatttgtcattttggtaacttttctaaggaattgatgaatcatgaagctt 17302242  T
Q  317 attttatttgcctctttcaaatgcattatctcaatcgtcnnnnnnnnnaggaaacctaggaagcatgaatacagatagggacacccgacacgacact-ac 415  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |||||| |||||||||||||||||||||||| ||    
T  17302243 attttatttgcctctttcaaatgcattatctcaatcgtc-ttttttttaggaaacctaggaagcaagaatacggatagggacacccgacacgacactgac 17302341  T
Q  416 ataacgacacaactaataatttaagaaaatcacatgattttgtgtaattatatgtattagtattatgtcggtgtctgacaatgtgacacgtttaatccat 515  Q
    |||  |||||||||||||||||||||||||||||| ||||||||||||||||||| | | | ||  ||||||||||||||||||||||| |||||||  |    
T  17302342 atatggacacaactaataatttaagaaaatcacataattttgtgtaattatatgtgtcattgttgggtcggtgtctgacaatgtgacacatttaatctgt 17302441  T
Q  516 ggagtggcaatgcttcataggaggaaactgatga 549  Q
    |||| ||||||||||||||||||||||| |||||    
T  17302442 ggagcggcaatgcttcataggaggaaacagatga 17302475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 10780844 - 10781016
Alignment:
Q  99 aaaaaacttgtgaatgggcttgttcgtgtttcgaaggttgatgatgctaaaaagcttgttgagaaaatcaaggacaagttttctgaaaacggagacaagt 198  Q
    ||||| ||||||||||| ||||||  | |||| |||||| | |||||||||||||| ||||||||| ||||||||| |||| ||| |||| | |||||||    
T  10780844 aaaaaccttgtgaatggacttgtttctatttcaaaggttaaggatgctaaaaagctggttgagaaactcaaggacaggtttcctgcaaacagtgacaagt 10780943  T
Q  199 ggggtgaacttgaagagagtttgcctcaggaatcttagaaga-ttgttgtatactgtcgttgtgtgctttattt 271  Q
    || || ||||||||||  | |||||||||||||||| ||||| ||||||| |||| |||||||||  |||||||    
T  10780944 ggagtcaacttgaagaagggttgcctcaggaatctt-gaagatttgttgtttactctcgttgtgtaatttattt 10781016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 7086802 - 7086844
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  7086802 ctaataatttgagaaaatcacataatttagtgtaattatatgt 7086844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 470
Target Start/End: Complemental strand, 24833293 - 24833243
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||| |||||||| ||||||||||| ||| |||| ||||||||||||||    
T  24833293 cgacactactaataagttaagaaaatcgcataatttagtgtaattatatgt 24833243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 468
Target Start/End: Original strand, 9658886 - 9658926
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatat 468  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  9658886 ctaataatttaagaaaatcacataattcagtgtaattatat 9658926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 7961026 - 7960909
Alignment:
Q  96 atgaaaaaacttgtgaatgggcttgttcgtgtttcgaaggttgatgatgctaaaaagcttgttgagaaaatcaaggacaagttttctgaaaacggagaca 195  Q
    ||||| || ||||||||||| |||||| ||||||| |||||||||||||||||| ||||| || || |||||||||| |||||| |||||||  | ||||    
T  7961026 atgaagaagcttgtgaatggacttgttggtgtttcaaaggttgatgatgctaaagagcttattaaggaaatcaaggagaagtttgctgaaaagagtgaca 7960927  T
Q  196 agtggggtgaacttgaag 213  Q
     ||||| |||| ||||||    
T  7960926 ggtgggatgaaattgaag 7960909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 470
Target Start/End: Complemental strand, 2665946 - 2665898
Alignment:
Q  422 acacaactaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||| ||||||||||| |||||||||||| |||| ||||||||||||||    
T  2665946 acaccactaataattttagaaaatcacataatttagtgtaattatatgt 2665898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 467
Target Start/End: Original strand, 31018597 - 31018636
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattata 467  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  31018597 ctaataatttcagaaaatcacatgatttagtgtaattata 31018636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 470
Target Start/End: Complemental strand, 34785042 - 34784992
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||||||||||  ||| |||||||||||| |||| ||||||||||||||    
T  34785042 cgacacaactaatttttttagaaaatcacataatttagtgtaattatatgt 34784992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 25846747 - 25846787
Alignment:
Q  427 actaataatttaagaaaatcacatgattttgtgtaattata 467  Q
    ||||||||||| ||||||||||||||||  |||||||||||    
T  25846747 actaataatttgagaaaatcacatgattcagtgtaattata 25846787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 12713380 - 12713317
Alignment:
Q  427 actaataatttaagaaaatcacatgattttgtgtaattatatgtattagtattatgtcggtgtc 490  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||    
T  12713380 actaataatttaagaaaatcacataatttagtgtaattatatgtattggtgttatgtcggtgtc 12713317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 12717471 - 12717408
Alignment:
Q  427 actaataatttaagaaaatcacatgattttgtgtaattatatgtattagtattatgtcggtgtc 490  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||    
T  12717471 actaataatttaagaaaatcacataatttagtgtaattatatgtattggtgttatgtcggtgtc 12717408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 12707926 - 12707863
Alignment:
Q  427 actaataatttaagaaaatcacatgattttgtgtaattatatgtattagtattatgtcggtgtc 490  Q
    ||||||||||||||||||||| || |||| ||| ||||||||||||| || |||||||||||||    
T  12707926 actaataatttaagaaaatcatataatttagtgcaattatatgtattggtgttatgtcggtgtc 12707863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 470
Target Start/End: Complemental strand, 14332700 - 14332652
Alignment:
Q  422 acacaactaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||| ||||||||||| |||||||||||| |||| ||||||||||||||    
T  14332700 acaccactaataatttgagaaaatcacataatttagtgtaattatatgt 14332652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 22881702 - 22881631
Alignment:
Q  395 ggacacccgacacgacact-acataacgacacaactaataatttaagaaaatcacatgattttgtgtaatta 465  Q
    ||||||| ||||||||||| |||   |||||||||||||||||| | |||||||||| |||| |||||||||    
T  22881702 ggacaccggacacgacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaatta 22881631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 470
Target Start/End: Complemental strand, 35999387 - 35999332
Alignment:
Q  415 cataacgacacaactaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||| ||| |||||||||||||||||||||||| || |||| || |||||||||||    
T  35999387 cataccgatacaactaataatttaagaaaatcatataatttagtataattatatgt 35999332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 15641082 - 15641042
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatat 468  Q
    |||||||||||||||||||||||||||  |||||| |||||    
T  15641082 ctaataatttaagaaaatcacatgattcagtgtaactatat 15641042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 34298435 - 34298487
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattatatgtat 472  Q
    |||||| ||||||||||| |||||||||||| |||  ||||||||||| ||||    
T  34298435 cgacaccactaataatttgagaaaatcacataattcagtgtaattatacgtat 34298487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 40181878 - 40181922
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatgtat 472  Q
    |||||||||| |||||||||||| |||  ||||||||||||||||    
T  40181878 ctaataatttgagaaaatcacataattcagtgtaattatatgtat 40181922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 490
Target Start/End: Original strand, 8160423 - 8160485
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatgtattagtattatgtcggtgtc 490  Q
    |||||||||||||||||| |||| |||| |||||||||||||| || ||||  ||||||||||    
T  8160423 ctaataatttaagaaaattacataatttagtgtaattatatgtgttggtatcgtgtcggtgtc 8160485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 27093465 - 27093424
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatg 469  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  27093465 ctaataatttaagaaaatcacataatttagtgtaattatatg 27093424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 27184836 - 27184877
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatg 469  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  27184836 ctaataatttaagaaaatcacataatttagtgtaattatatg 27184877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 469
Target Start/End: Original strand, 41020495 - 41020544
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattatatg 469  Q
    |||||||||||||||||||  |||||||||| |||| |||||||||||||    
T  41020495 cgacacaactaataatttacaaaaatcacataatttagtgtaattatatg 41020544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 1433462 - 1433503
Alignment:
Q  429 taataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    ||||||||| |||||||||||| |||| ||||||||||||||    
T  1433462 taataatttgagaaaatcacatcatttggtgtaattatatgt 1433503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 466
Target Start/End: Original strand, 37870894 - 37870938
Alignment:
Q  422 acacaactaataatttaagaaaatcacatgattttgtgtaattat 466  Q
    |||| |||||| |||| ||||||||||||||||| ||||||||||    
T  37870894 acactactaatcatttgagaaaatcacatgatttcgtgtaattat 37870938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 465
Target Start/End: Original strand, 33178024 - 33178069
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaatta 465  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||    
T  33178024 cgacacaactaataatttaaaaaaatcacataatttagtgtaatta 33178069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 469
Target Start/End: Original strand, 35017043 - 35017085
Alignment:
Q  427 actaataatttaagaaaatcacatgattttgtgtaattatatg 469  Q
    ||||||||||| |||||||||||| |||| |||||||||||||    
T  35017043 actaataatttgagaaaatcacataatttagtgtaattatatg 35017085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 450
Target Start/End: Original strand, 6770543 - 6770572
Alignment:
Q  421 gacacaactaataatttaagaaaatcacat 450  Q
    ||||||||||||||||||||||||||||||    
T  6770543 gacacaactaataatttaagaaaatcacat 6770572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 11313852 - 11313804
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatgtattagt 476  Q
    |||||||||| |||||||||||| |||| |||||||||||||| |||||    
T  11313852 ctaataatttgagaaaatcacataatttagtgtaattatatgtgttagt 11313804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 49505206 - 49505164
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  49505206 ctaataatttgagaaaatcacataatttagtgtaattatatgt 49505164  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Complemental strand, 32804591 - 32804550
Alignment:
Q  429 taataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    ||||||||| |||||||||||| |||| ||||||||||||||    
T  32804591 taataatttgagaaaatcacataatttagtgtaattatatgt 32804550  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 465
Target Start/End: Original strand, 55401074 - 55401119
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaatta 465  Q
    |||||||||||||||||| | |||||||||| |||| |||||||||    
T  55401074 cgacacaactaataatttgaaaaaatcacataatttagtgtaatta 55401119  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 467
Target Start/End: Complemental strand, 15816189 - 15816142
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattata 467  Q
    |||||||||||||||||| | |||||||||| |||| |||||||||||    
T  15816189 cgacacaactaataatttgaaaaaatcacataatttagtgtaattata 15816142  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 470
Target Start/End: Complemental strand, 4786398 - 4786348
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||| | |||||||||||||||||||||| |||  ||||||||||||||    
T  4786398 cgacaccattaataatttaagaaaatcacataattcagtgtaattatatgt 4786348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 14731719 - 14731761
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  14731719 ctaataatttgagaaaatcacataatttagtgtaattatatgt 14731761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 38079009 - 38079047
Alignment:
Q  431 ataatttaagaaaatcacatgattttgtgtaattatatg 469  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  38079009 ataatttaagaaaatcacatgattcagtgtaattatatg 38079047  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 39954331 - 39954289
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  39954331 ctaataatttgagaaaatcacataatttagtgtaattatatgt 39954289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 11803267 - 11803308
Alignment:
Q  429 taataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||||||||||||||||||| |||  ||||||||||||||    
T  11803267 taataatttaagaaaatcacataattcagtgtaattatatgt 11803308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 3677785 - 3677837
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattatatgtat 472  Q
    |||||||| ||||||||| | |||||||||| ||| | |||||||||||||||    
T  3677785 cgacacaattaataattttaaaaaatcacataattctatgtaattatatgtat 3677837  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 467
Target Start/End: Complemental strand, 12895334 - 12895287
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattata 467  Q
    |||||||| ||||||||| | |||||||||| ||||||||||||||||    
T  12895334 cgacacaaataataatttgaaaaaatcacataattttgtgtaattata 12895287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 13134460 - 13134499
Alignment:
Q  431 ataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  13134460 ataatttaagaaaatcacataatttagtgtaattatatgt 13134499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 17446070 - 17446113
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaat 463  Q
    |||||| |||||||||||||||||||||||| |||| |||||||    
T  17446070 cgacaccactaataatttaagaaaatcacataatttagtgtaat 17446113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 903930 - 903979
Alignment:
Q  429 taataatttaagaaaatcacatgattttgtgtaattatatgtattagtat 478  Q
    ||||||||| |||||||||||| |||  |||||||||||||||| |||||    
T  903930 taataatttgagaaaatcacataattcagtgtaattatatgtatcagtat 903979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 465
Target Start/End: Complemental strand, 27706237 - 27706192
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaatta 465  Q
    |||||||| ||||||||||| |||||||||| |||| |||||||||    
T  27706237 cgacacaattaataatttaaaaaaatcacataatttagtgtaatta 27706192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 10803354 - 10803306
Alignment:
Q  124 gtgtttcgaaggttgatgatgctaaaaagcttgttgagaaaatcaagga 172  Q
    |||||||||||||||||||||||||  | ||| ||||| ||||||||||    
T  10803354 gtgtttcgaaggttgatgatgctaacgaacttattgaggaaatcaagga 10803306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 468
Target Start/End: Complemental strand, 21539927 - 21539879
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattatat 468  Q
    |||||| | ||||||||||||||||||| || |||| ||||||||||||    
T  21539927 cgacaccattaataatttaagaaaatcatataatttagtgtaattatat 21539879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 36635325 - 36635373
Alignment:
Q  422 acacaactaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||| ||||||||||| |||||||||||| |||  ||||||||||||||    
T  36635325 acaccactaataatttgagaaaatcacataattcagtgtaattatatgt 36635373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 135364 - 135322
Alignment:
Q  428 ctaataatttaagaaaatcacatgattttgtgtaattatatgt 470  Q
    |||||||||| |||||||||||| ||| |||||||||||||||    
T  135364 ctaataatttgagaaaatcacataattctgtgtaattatatgt 135322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 468
Target Start/End: Complemental strand, 85033 - 84985
Alignment:
Q  420 cgacacaactaataatttaagaaaatcacatgattttgtgtaattatat 468  Q
    |||||| |||| |||||||||||||||| || ||| |||||||||||||    
T  85033 cgacaccactactaatttaagaaaatcatataattatgtgtaattatat 84985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 17808 - 17764
Alignment:
Q  421 gacacaactaataatttaagaaaatcacatgattttgtgtaatta 465  Q
    ||||||||||||||||| | |||||||||| |||| |||||||||    
T  17808 gacacaactaataatttgaaaaaatcacataatttagtgtaatta 17764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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