View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_12 (Length: 539)
Name: NF17117_low_12
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 52484018 - 52484507
Alignment:
| Q |
18 |
aggacataactctctctaacaaagaaggttttcgaacgagttgagggtgagtgaactcggactc------------------tggctcgggttgtgcaac |
99 |
Q |
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| T |
52484018 |
aggacataactctctctaacaaagaaggttttcgaacgagttgagggtgagtgaactcggactcggactctgactctagctctggctcgggttgtgcaac |
52484117 |
T |
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| Q |
100 |
aaatgatggttcttggttgtagtgacggaggttaaaggacctgatacggttgagaagtgaaggtgaacgattgagttgaggttgttggatttggtcgttt |
199 |
Q |
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| T |
52484118 |
aaatgatggttcttggttgtagtgacggaggttaaaggacctgatacggttgagaagtgaaggtgaacgattgagttgaggttgttggatttggtcgttt |
52484217 |
T |
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| Q |
200 |
ttgggtggaccattgaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtgtgaaccatgttgctatgaaag |
299 |
Q |
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| T |
52484218 |
ttgggtggaccattgaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtgtgaaccatgttgctatgaaag |
52484317 |
T |
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| Q |
300 |
ttgttgggtctgccatcgttgttaatttcttaatttggagggtttttgcgttgagatcgagcttcaacactgactgaagagtgaagacaatgtagggtgg |
399 |
Q |
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| T |
52484318 |
ttgttgggtctgccatcgttgttaatttcttaatttggagggtttttgcgttga----gaccttcaac----actgaagagtgaa--------------- |
52484394 |
T |
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| Q |
400 |
gggtgtaaatagagaaaggaaaatcaccatttacgtcttagtcatgtagtcagaagaaaggag-aaaaaagttgataaataaataaatatcatgggggtg |
498 |
Q |
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| T |
52484395 |
gggtgtaaatagagaaaggaaaatcaccatttacgtc-tagtcatgtagtcagaagaaaggagaaaaaaagttgataaataaataaatatcatgggggtg |
52484493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 52464891 - 52464962
Alignment:
| Q |
214 |
gaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtgtgaacca |
285 |
Q |
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|||||||||| | ||||| |||||||| ||||||||||| |||| |||||||| || ||| ||||||||||| |
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| T |
52464891 |
gaagcgagaaacgagagcaatggtaccaatgacaaggttaacaaagatgaaaagaggagagggtgtgaacca |
52464962 |
T |
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