View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_15 (Length: 510)
Name: NF17117_low_15
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 7345773 - 7345280
Alignment:
| Q |
1 |
agggtaaagaatttagacaaatgtgtccattgttttcacaaccaacttcataaattatggtataaataacttaccaaccactccaagactcagtccatag |
100 |
Q |
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| T |
7345773 |
agggtaaagaatttagacaaatgtgtccattgttttcacaaccaacttcataaattatggtataaataacttaccaaccactccaagactcagtccatag |
7345674 |
T |
|
| Q |
101 |
tttaggcttgtatggtttattgggagagaaatcatcacagtaaaaaccattgcaagcatttatctgtaggaaaaaattggatggatcataaatcatactc |
200 |
Q |
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| T |
7345673 |
tttaggcttgtatggtttattgggagagaaatcatcacagtaaaaaccattgcaagcatttatctgtaggaaaaaattggatggatcataaatcatactc |
7345574 |
T |
|
| Q |
201 |
tattatcttaactaaaagctagtcatatttagattagcagtgagtttgtctgaatcacgttacgcctctgtgacttaagcaaaagttacactttgaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7345573 |
tattatcttaactaaaagctagtcatatttagattagcagtgagtttgtctgaatcactttacgcctctgtgacttaagcaaaagttacactttgaaact |
7345474 |
T |
|
| Q |
301 |
tcgataaaatcacagtgtcactgtcatttcatcaaactcgccgtcattccaaatttgcactaaatcaggcaagatcatgagaagggtcactcaccactgg |
400 |
Q |
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| T |
7345473 |
tcgataaaatcacagtgtcactgtcatttcatcaaactcgccgtcattccaaatttgcactaaatcaggcaagatcatgagaagggtcactcaccactgg |
7345374 |
T |
|
| Q |
401 |
atctggggcatcatcttccttacacatcacccaagggacacctgtacctaatccaacagccatttttgcagcccagtttgagtatgcatgacca |
494 |
Q |
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| T |
7345373 |
atctggggcatcatcttccttacacatcacccaagggacacctgtacctaatccaacagccatttttgcagcccagtttgagtatgcatgacca |
7345280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 390 - 494
Target Start/End: Complemental strand, 52646576 - 52646472
Alignment:
| Q |
390 |
ctcaccactggatctggggcatcatcttccttacacatcacccaagggacacctgtacctaatccaacagccatttttgcagcccagtttgagtatgcat |
489 |
Q |
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|||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||| |||||||| |
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| T |
52646576 |
ctcaccacaggatctggggcatcattttccttgcacatcacccaagggactcctgttcccaatccaacagccatatttgcagcccagtttaggtatgcat |
52646477 |
T |
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| Q |
490 |
gacca |
494 |
Q |
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||||| |
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| T |
52646476 |
gacca |
52646472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 52646835 - 52646715
Alignment:
| Q |
70 |
cttaccaaccactccaagactcagtccatagtttaggcttgtatggtttattgggagagaaatcatcacagtaaaaaccattgcaagcatttatctgtag |
169 |
Q |
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||||||| |||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||| || | ||| |||||||| |
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| T |
52646835 |
cttaccagccactccaagactcggtccacatgctaggcttatatggtttatttggagagaaatcatcacagtaaaaaccattacatgaattaatctgtag |
52646736 |
T |
|
| Q |
170 |
gaaaaaattggatggatcata |
190 |
Q |
| |
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| |||||||||||||||| |
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| T |
52646735 |
tggagaattggatggatcata |
52646715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 34569998 - 34570070
Alignment:
| Q |
280 |
caaaagttacactttgaaacttcgataaaatcacagtgtcactgtcatttcatcaaactcgccgtcattccaa |
352 |
Q |
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|||||| | |||||||||| || | ||||||||| || |||||| |||| |||||||||||||| ||||||| |
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| T |
34569998 |
caaaagctgcactttgaaaatttaacaaaatcacaatgccactgtgattttatcaaactcgccgtgattccaa |
34570070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 476
Target Start/End: Original strand, 8141258 - 8141341
Alignment:
| Q |
393 |
accactggatctggggcatcatcttccttacacatcacccaagggacacctgtacctaatccaacagccatttttgcagcccag |
476 |
Q |
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|||||||||||||| |||||||||||||| ||||| | ||| || || || || || | | ||||||||||||| ||||||||| |
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| T |
8141258 |
accactggatctggagcatcatcttccttgcacataatccatggaaccccagttcccatttcaacagccattttcgcagcccag |
8141341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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