View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_16 (Length: 503)
Name: NF17117_low_16
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 34658198 - 34658681
Alignment:
| Q |
1 |
aaaaagtccaacagacataaaaacatcagcaagtccatgaaaacaatattgaggtaccaaccaaaatacacttattggaataattgcttttggatcatcc |
100 |
Q |
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| T |
34658198 |
aaaaagtccaacagacataaaaacatcagcaagtccatgaaaacaatattgaggtaccaaccaaaatacacttattggaataattgcttttggatcatcc |
34658297 |
T |
|
| Q |
101 |
aataagttatacttagcagcaacttcttttcttttgatttcaactggtgctgagattaatgtggctataatgttgattataaatccaattcccattcttt |
200 |
Q |
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| T |
34658298 |
aataagttatacttagcagcaacttcttttcttttgatttcaactggtgctgagattaatgtggctataatgttgattataaatccaattcccattcttt |
34658397 |
T |
|
| Q |
201 |
gtatgcacgtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacact |
300 |
Q |
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| T |
34658398 |
gtatgcacgtgattccaaccggattatttgtgaatttacggacgattgggatgaatacgcgttcataaagaattactcctgccatcatggttacaacact |
34658497 |
T |
|
| Q |
301 |
gaaaactgacatgttggctggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgac |
400 |
Q |
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| T |
34658498 |
gaaaactgacatgttggctggtgaaatttgaaatgtgtgagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgag |
34658597 |
T |
|
| Q |
401 |
gcagctataagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggct |
484 |
Q |
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| T |
34658598 |
gcagctataagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggct |
34658681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 6 - 484
Target Start/End: Original strand, 34664876 - 34665354
Alignment:
| Q |
6 |
gtccaacagacataaaaacatcagcaagtccatgaaaacaatattgaggtaccaaccaaaatacacttattggaataattgcttttggatcatccaataa |
105 |
Q |
| |
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|||||||| ||| ||||| ||||| | |||||| ||| |||| ||||||||||||||||| |||||||| || ||||||||||||||| ||| ||||| |
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| T |
34664876 |
gtccaacattcatgaaaacttcagccactccatgcaaaaaatactgaggtaccaaccaaaacacacttatagggataattgcttttggactatctaataa |
34664975 |
T |
|
| Q |
106 |
gttatacttagcagcaacttcttttcttttgatttcaactggtgctgagattaatgtggctataatgttgattataaatccaattcccattctttgtatg |
205 |
Q |
| |
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|| || || | |||||||| ||||||||||||||| || |||||| | || |||||||||||||| || | ||| || |||||||||||||| | |
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| T |
34664976 |
gtggtatttggaagcaactttttttcttttgatttccaccaatgctgaaactatagtggctataatgttaatcacaaagcctattcccattctttgcaaa |
34665075 |
T |
|
| Q |
206 |
cacgtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaa |
305 |
Q |
| |
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|| ||||||||| | ||||| ||||||||| |||||| || ||| ||||||| |||||| || ||||| || |||| ||||||||||| || ||||||| |
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| T |
34665076 |
catgtgattccagcaggattctttgtgaatctacggatgaatggaacgaataagcgttcgtatagaataacacctgtcatcatggttagcacgctgaaaa |
34665175 |
T |
|
| Q |
306 |
ctgacatgttggctggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagc |
405 |
Q |
| |
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|| ||| |||| |||||||||| |||||| ||||||||||||| |||||||| ||||||||| | || || |||||| | | || ||| |||| |
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| T |
34665176 |
ttgccatactggccggtgaaatttcgaatgtgtgagagaggtgacgatccattgtacgagcttgtacaatcacaaaactatgttgagatgatgatgcagt |
34665275 |
T |
|
| Q |
406 |
tataagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggct |
484 |
Q |
| |
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||| |||| |||||||||||| |||||||||| ||||| | | | |||||||||| ||||||||||||||||||||| |
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| T |
34665276 |
tatgagtagaattcctgatgcccaaattggaagcattctaaccaggcattttaactcttcaactctatggacagtggct |
34665354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 6 - 481
Target Start/End: Original strand, 34645176 - 34645651
Alignment:
| Q |
6 |
gtccaacagacataaaaacatcagcaagtccatgaaaacaatattgaggtaccaaccaaaatacacttattggaataattgcttttggatcatccaataa |
105 |
Q |
| |
|
||||||||||||| ||||| ||||| | |||||||| ||||||||||||||| |||||||||||||| | || || ||||||||||||||||||||||| |
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| T |
34645176 |
gtccaacagacatgaaaacttcagccactccatgaagacaatattgaggtactaaccaaaatacactaaaagggattattgcttttggatcatccaataa |
34645275 |
T |
|
| Q |
106 |
gttatacttagcagcaacttcttttcttttgatttcaactggtgctgagattaatgtggctataatgttgattataaatccaattcccattctttgtatg |
205 |
Q |
| |
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|||| |||| ||||||||| ||||||||| |||| ||| ||||||| | || || ||||||||||| | | ||| || | |||||||||||||| |
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| T |
34645276 |
gttaaactttgcagcaactgtttttcttttcgtttccactagtgctgaaactatagtagctataatgttaaccacaaaccctactcccattctttgtaaa |
34645375 |
T |
|
| Q |
206 |
cacgtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaa |
305 |
Q |
| |
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|| ||||||||| | ||||| ||||||||| ||||| ||| ||| ||||| | ||||||||| || || |||||| ||||||||||| |||| |||| |
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| T |
34645376 |
catgtgattccagcaggattctttgtgaatctacgggcgaatggaacgaaaaagcgttcatatagcataactcctatcatcatggttaggacaccaaaaa |
34645475 |
T |
|
| Q |
306 |
ctgacatgttggctggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagc |
405 |
Q |
| |
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|||||| |||||||||| |||||| |||| ||| ||||||||||||||| | |||||||||| ||||| |||||| | |||| ||| | |
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| T |
34645476 |
ttgacatattggctggtgcaatttggaatgaatgagtgaggtgacggtccatcgaacgagcttgttgaatgacaaaactacctaaatgtgatgaagacat |
34645575 |
T |
|
| Q |
406 |
tataagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtg |
481 |
Q |
| |
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||| || ||||||||||| || |||||||||| ||||||||||| | ||| | ||||||||||||||||||||| |
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| T |
34645576 |
tatgagcaaaattcctgaagcccaaattggaagcattctgatgatagctttcagttcctcaactctatggacagtg |
34645651 |
T |
|
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