View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_17 (Length: 501)
Name: NF17117_low_17
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 3 - 492
Target Start/End: Original strand, 53295289 - 53295791
Alignment:
| Q |
3 |
atgatagtataattttttgttgtcaaaagatcagtaaggtgtgtgtgtagtagtattactattattgtatcgaaaatttatattcaatcattggatattt |
102 |
Q |
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| T |
53295289 |
atgatggtataattttttgttgtcaaaagatcagtaaggtgtgtgtgtagtagtattactattattgtatcgaaattttatattcaatcattggatattt |
53295388 |
T |
|
| Q |
103 |
ttaaccaatcaaacctttgtgatttaaattgtcacatacttgcttggttgatacgaaatgaaaacgacggcttggttacaagaattaattgagcctcatt |
202 |
Q |
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| T |
53295389 |
ctaaccaatcaaacctttgtgatttaaattgtcacatacttgcttggttgatacgaaatgaaaacgacggcttggttacaagaattaattgagcctcatt |
53295488 |
T |
|
| Q |
203 |
agaaggtgacgctcacgtattgcttttaagaaaaagttgacttattatcagcttaagtgatacttacctcaatgttttttgaatgagtgatacgtcaata |
302 |
Q |
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| T |
53295489 |
agaaggtgacgctcacgtattgcttttaagaaaaagttgactttttatcagcttaagtgatacttacctcaatgttttttgaatgagtgatacgtcaata |
53295588 |
T |
|
| Q |
303 |
taaagaatagagctaggtatttttatcatgaacgttacgtgactagac--ttccaagtaattac-----------catgagcatgtgtccaggcttgtgt |
389 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
53295589 |
taaagaatagagctaggtatttttatcatgaacattatgtgactagacagttccaagtaattaccatgagctagacatgagcatgtgtccaggcttgtgt |
53295688 |
T |
|
| Q |
390 |
ttttaacttcnnnnnnncaacaaaatcaacgttacatgatctaaaactttttgacatgaaagnnnnnnngtagttgaaaacggtattgttagtagagaat |
489 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53295689 |
ttttaacttttttttctcaacaaaatcaacgttacatgatctaaaactttttgacatgaaagaaaaaaagtagttgaaaacggtattgttagtagagaat |
53295788 |
T |
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| Q |
490 |
aat |
492 |
Q |
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| T |
53295789 |
aat |
53295791 |
T |
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