View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_18 (Length: 500)
Name: NF17117_low_18
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 42536104 - 42535627
Alignment:
| Q |
1 |
aacctattccttttttatcatcagttggttggagttggaccagacatgaacatgaccatgtctgttacccgtataaatcgtgttcctggcggtcttcatt |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
42536104 |
aacctattccttttttatcattagttggttggagttggaccagacatgaacatgaccatgtctgttacccgtataaatcgcgttcc----ggtcttcatc |
42536009 |
T |
|
| Q |
101 |
ataatagagggtggttataccctccaaagcctctgtaactgacannnnnnnagatgaatcaatgcactccaaagcttttgtagcattaattttcgccaca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42536008 |
ataatagagggtggttataccctccaaagcctctgtaactgacatttttttagatgaatcaatgcactccaaagcttttgtagcattaattttcgccaca |
42535909 |
T |
|
| Q |
201 |
catttccccgataagatgttgctcacattgatggaacctatcacattggtaaccatcgattgatcttcagagtcatccctgcagtaagaaatgatcaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535908 |
catttccccgataagatgttgctcacattgatggaacctatcacattggtaaccatcgattgatcttcagagtcatccctgcagtaagaaatgatcaggt |
42535809 |
T |
|
| Q |
301 |
tctgatcacttgttatgtaattgttgtttttgaagtctggatgccatagtggatgacgtaacaagtgatcctccaatgatgtaaccagttctccacgaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42535808 |
tctgatcacttgttatgtaattgttgtttttgaagtctggatgccatagtggatgccgtaacaagtgatcctccaatgatgtaaccagttctccatgaaa |
42535709 |
T |
|
| Q |
401 |
gttccatacaaaatttgtttggtttttgagagtaaggaataactgtttcttgcatagaaagataaatcttgatgggttcatg |
482 |
Q |
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| T |
42535708 |
gttccatacaaaatttgtttggtttttgagagtaaggaataactgtttcttgcatagaaagataaatcttgatgggttcatg |
42535627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 42530402 - 42529923
Alignment:
| Q |
1 |
aacctattccttttttatcatcagttggttggagttggaccagacatgaacatgaccatgtctgttacccgtataaatcgtgttcctggcggtcttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
42530402 |
aacctattccttttttatcatcagttggttggagttggaccagacatgaacaagaccatgtctgttacccgtataaatcgcgttcc----ggtcttcatc |
42530307 |
T |
|
| Q |
101 |
ataa--------tagagggtggttataccctccaaagcctctgt------aactgacannnnnnnagatgaatcaatgcactccaaagcttttgtagcat |
186 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
42530306 |
ataaattcataatagagggtggttataccctccaaagcctctgggactggaactgacattatttgagatgaatcaatgcactccaaagcttttgcagcat |
42530207 |
T |
|
| Q |
187 |
taattttcgccacacatttccccgataagatgttgctcacattgatggaacctatcacattggtaaccatcgattgatcttcagagtcatccctgcagta |
286 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||| |
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| T |
42530206 |
taattttcgccacacatttccccgacaagatgctgctcacattgatggaacctaccgcattggtttccttcgattgatcttcagagtcatccctgcagta |
42530107 |
T |
|
| Q |
287 |
agaaatgatcaggttctgatcacttgttatgtaattgttgttt---ttgaagtctggatgccatagtggatgacgtaacaagtgatcctccaatgatgta |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42530106 |
agaaatgatcaggttctgatcacttgttatgtaattgtggtttaagttgaagtgtgcatgccatagtggatgtcgtaacaagtgatcctccaatgatgta |
42530007 |
T |
|
| Q |
384 |
accagttctccacgaaagttccatacaaaatttgtttggtttttgagagtaaggaataactgtttcttgcatagaaagataaat |
467 |
Q |
| |
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||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||| ||||||| | |||| ||||||| |
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| T |
42530006 |
accagttctccacgaaagttccatacagaaattgttcggtttatgagagtaaggaataactctttcttgtaaagaaggataaat |
42529923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 467
Target Start/End: Complemental strand, 27825863 - 27825658
Alignment:
| Q |
253 |
ccatcgattgatcttcagagtcatccctgcagtaagaaatgatcaggttctgatcacttgttatgtaattgttgttt---ttgaagtctggatgccatag |
349 |
Q |
| |
|
||||| ||||||||||||| ||| | ||||||| || || ||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||| |
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| T |
27825863 |
ccatccattgatcttcagattcagctttgcagtacgatataatcaggtcctgatcacttgttatgtatatgttgtttgtgttgcagtctggatgccata- |
27825765 |
T |
|
| Q |
350 |
tggatgacgtaacaagtgatcctccaatgatgtaaccagttctccacgaaagttccatacaaaatttgtttggtttttgagagtaaggaataactgtttc |
449 |
Q |
| |
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||||||||||||| |||||||| || ||||| |||||||||||||| ||| || |||| | ||| ||| ||||||||||||||| || |
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| T |
27825764 |
-----------acaagtgatcctcaaatgatgtgacaagttcgccacgaaagttccagacagaaactgttcgatttctgaaagtaaggaataactgattt |
27825676 |
T |
|
| Q |
450 |
ttgcatagaaagataaat |
467 |
Q |
| |
|
| | | |||||||||||| |
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|
| T |
27825675 |
tcgtacagaaagataaat |
27825658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 27826073 - 27826012
Alignment:
| Q |
177 |
tttgtagcattaattttcgccacacatttccccgataagatgttgctcacattgatggaacc |
238 |
Q |
| |
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|||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
27826073 |
tttgcagcattaattttcgccacacatttccctgtcaagatgttgctcacattgatggaacc |
27826012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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