View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_19 (Length: 499)
Name: NF17117_low_19
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 4227228 - 4227438
Alignment:
| Q |
10 |
ataattctgagaattaggaaggaattgagagagtaatctttgcttcttctctggataaagtgctacacctaatgttttattcttctctttgtgttttgtt |
109 |
Q |
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| T |
4227228 |
ataactctgagaattaggaaggaattgagagagtaatctttgcttcttgtctggataaagtgctagac-taatgttttattcttctctttgtgttttgtt |
4227326 |
T |
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| Q |
110 |
ttcctatttgaccattgaacatattccaccatccatattgcgtgcatggattatattcggttccttggtctctgtctctctaagcagttgcgtggtctat |
209 |
Q |
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| T |
4227327 |
ttcctatttgaccattgaacatattccaccatccatattgcgtgcatggattatattcggttccttggtctctgtctctcgaagcagttgcgtggtctat |
4227426 |
T |
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| Q |
210 |
agcaaccatcca |
221 |
Q |
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| T |
4227427 |
agcaaccatcca |
4227438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 248 - 457
Target Start/End: Original strand, 4227465 - 4227669
Alignment:
| Q |
248 |
aatggactagccttgccatgatctatgtggacctctcattttgtcaaacagaatcaatattagttgagctgaactaactcaattgaagtctttcaaagta |
347 |
Q |
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| T |
4227465 |
aatggactagccttgccatgatctatgtggacctctcattttgtcaaacagaatcaatattagttgagctgaactaactcaattgaagtctttcaaagta |
4227564 |
T |
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| Q |
348 |
ctagtatcatatttatatgacaaaaatgtgtgcacacaaatgattttttaatatgcatgcacaaacactcttgctatgtccattattatatcagtacatt |
447 |
Q |
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| T |
4227565 |
c---tatc--atttatatgacaaaaatgtgtgcacacaaatgattttttaatatgcatgcacaaacactcttgctatctccattattatatctgtacatt |
4227659 |
T |
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| Q |
448 |
tttttatccc |
457 |
Q |
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| T |
4227660 |
tttttatccc |
4227669 |
T |
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