View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_20 (Length: 490)
Name: NF17117_low_20
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 25321085 - 25320870
Alignment:
| Q |
18 |
aattattcaattcaaccttcctatttctcatatgtatggtatgtctttgggtttttcaggccaaaaaacatctagtaattcatcgttggatgattggtct |
117 |
Q |
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| T |
25321085 |
aattattcaattcaaccttcctatttctcatttgtatggtatgtctttggatttt-caggccaaaaaacatttagtaattcatcgttggatgattggtct |
25320987 |
T |
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| Q |
118 |
agggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtacttctaattcgatttccaactataaagtttttattatatctatgatg |
217 |
Q |
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| T |
25320986 |
agggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtacttctaattcgatttccaactataaagtttttattatatctatgatg |
25320887 |
T |
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| Q |
218 |
ttacaaaccttcatatt |
234 |
Q |
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| T |
25320886 |
ttacaaaccttcatatt |
25320870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 307 - 477
Target Start/End: Complemental strand, 25320803 - 25320633
Alignment:
| Q |
307 |
ctctccttttattcttgacatattgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatg |
406 |
Q |
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| T |
25320803 |
ctctccttttattcttgacatattgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatg |
25320704 |
T |
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| Q |
407 |
aaataagttatggcttatatcacgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
477 |
Q |
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| T |
25320703 |
aaataagttatggcttatatcacgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
25320633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 25326782 - 25326661
Alignment:
| Q |
74 |
caggccaaaaaacatctagtaattcatcgttggatgattggtctagggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtactt |
173 |
Q |
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| T |
25326782 |
caggccatagaacatttcgtaattcatccttgaatgattggtctagggtgaagtacttgcataaatacattgagaccatagctaatgaaataaggtactt |
25326683 |
T |
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| Q |
174 |
ctaattcgatttccaactataa |
195 |
Q |
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||| || ||||| ||| ||||| |
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| T |
25326682 |
ctactttgattttcaaatataa |
25326661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 329 - 477
Target Start/End: Complemental strand, 25326588 - 25326440
Alignment:
| Q |
329 |
ttgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatgaaataagttatggcttatatca |
428 |
Q |
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| T |
25326588 |
ttgaaaggagtggatcgaatataaaaggttattttgtatggtccttcatggatgtgcttgaaatactgagtggatatgaagaaagttttggtctatacta |
25326489 |
T |
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| Q |
429 |
cgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
477 |
Q |
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| T |
25326488 |
catagatatgaaggatccaaacttgaagagacaacctaagctctctgct |
25326440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 470
Target Start/End: Complemental strand, 5216486 - 5216370
Alignment:
| Q |
354 |
aggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatgaaataagttatggcttatatcacgtagatatgaacgatccaagtttg |
453 |
Q |
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|||||| ||||||||| ||| ||||||| ||| || ||| | |||||||||||| |||||||||||||||| || ||||| || | ||||||| ||| |
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| T |
5216486 |
aggttactttgtatgggcctttttggatgtgtttgagttactaggtggatatgaagcaagttatggcttatattacatagatttggaagatccaaccttg |
5216387 |
T |
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| Q |
454 |
aagagacaacctaaact |
470 |
Q |
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| T |
5216386 |
aggaggcaacctaaact |
5216370 |
T |
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