View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_21 (Length: 487)
Name: NF17117_low_21
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 53 - 477
Target Start/End: Original strand, 29759645 - 29760073
Alignment:
| Q |
53 |
tcaaattatattcttacaaaagaatactaatttatattgatttgaacattttatttnnnnnnnnnt---tatagcacaaactctcttgcagtttattttt |
149 |
Q |
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| T |
29759645 |
tcaaattatattcctacaaaagaatactaatttatattgatttgaacattttatttaaaaaaaaaaaactatagcacaaaatctcttgcagtttattttt |
29759744 |
T |
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| Q |
150 |
gaatgtagaggaaatatatttccctgtcaagatgctctaacattacattggcatcgaggaaaatatggatatatatgaaagtcaaacatctttaaaatta |
249 |
Q |
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| T |
29759745 |
gaatgtagaggaaatatatttcccagtcaagatgctctaacattacattggcatcgaggaaaatatggatatatatgatagtcaaacatctttaaaatta |
29759844 |
T |
|
| Q |
250 |
taatttttcagaaatatacaagtcatcacttcgcctataccccacatt-cccaaatgtcatttatttcaattttgtcatctcaataaattagaaagatac |
348 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29759845 |
taatttttcaaaaatatacaagtcatcgcttcgcctataccccacatttcccaaatgtcatttatttcaattttgtcatctcaataaattagaaagatac |
29759944 |
T |
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| Q |
349 |
tatctacaactaaaacagacccaaagcggtggcataaactccaacaaggtcgttacaaatgtaatgttgatgcatccttctcatcacttcggaaccgtac |
448 |
Q |
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||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29759945 |
tatttacaactaaaatagacccaaaacagtggcataaactccaacaaggtcgttacaaatgtaatgttgatgcatccttctcatcacttcggaaccgtac |
29760044 |
T |
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| Q |
449 |
atgtattgacatttgtttgcgtgatgatg |
477 |
Q |
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| T |
29760045 |
atgtattgacatttgtttgcgtgatgatg |
29760073 |
T |
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