View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_22 (Length: 483)
Name: NF17117_low_22
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 18570585 - 18570124
Alignment:
| Q |
18 |
gtaatcacaatattagtaattcttttgcatttatatcacttaccatatacgctctatgtcatctttttgagacttgtctagatggacacagctgttttaa |
117 |
Q |
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| T |
18570585 |
gtaatcacaatattaggaattcttttgcatttatatcacttaccatatacgctctatg-catctttttgagacttgcccagatggacacagctgttttaa |
18570487 |
T |
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| Q |
118 |
tatcaatgtatgtaattcttctctataaaacgattcattgatcatgagtaaatcaagtattttaatttcacnnnnnnnn-----ttatatcacaaaatcc |
212 |
Q |
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| T |
18570486 |
tatcaatgtatgtaattcttctctataaatcgattcattgatcatgagtaaatcaattattttaatttcacaaaaaaaaaaaaattatatcacaaaatcc |
18570387 |
T |
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| Q |
213 |
ttactaagaacaaaaatatctttgtattcaatatgtcttacatttatcccttcaacacaacatgcacccatttatcattgggtgtgtgtccatgtcccaa |
312 |
Q |
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| T |
18570386 |
ttactaagaacaaaaatatctttgtattcaatatgtcttacatttatcccttcaatacaacatgcacccatttatcattgggtgtgtgtccatgtcccaa |
18570287 |
T |
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| Q |
313 |
attgaatacacagacatatcatattggaaggagatggtggggttattcaactaaattgatgctttttgatgatccttggaagatcaagaaggtgctccaa |
412 |
Q |
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| T |
18570286 |
attgaatacacagacatatcatattggaaggagatggtggggttattccactaaattgatgctttttgatgatccttggaagatcaagaaggtgctccaa |
18570187 |
T |
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| Q |
413 |
gaggatgatattgttgataagctattgttggacaaagatttggtagaggaattggtgttgcct |
475 |
Q |
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| T |
18570186 |
gaggatgatattgttgataagctattgttggacaaagatttggtagaggaattggtgttgcct |
18570124 |
T |
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