View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_24 (Length: 460)
Name: NF17117_low_24
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 12062441 - 12061997
Alignment:
| Q |
1 |
agatagataatatgagttaccgtaaaccattgaatctctgtttgtatatgcattgcaggactcaatctgccattacgattagatgaagaaactaaaagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12062441 |
agatagataatatgagttaccgtaaaccattgaatctctgtttgtatatgcattgcaggactcaatctgccattacgattagatgaagaaactaaaagag |
12062342 |
T |
|
| Q |
101 |
ctgccgtgtgcagcaggttattgcccaacacgtctgtgcgatatcgaaacatctccttctccaatccttttagaaagtatatgagttggaacacttttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12062341 |
ctgccgtgtgcagcaggttattgcccaacacgtctgtgcgatatcgaaacatctccttctccaatccttttagaaagtatatgagttggaacacttttag |
12062242 |
T |
|
| Q |
201 |
tctgcgattctgaattgcataccaaaatatgcctctaccattgttgtcagtaactgacagcagatcaggattagcttccctcatagcatttatgaactca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12062241 |
tctgcgattctgaattgcataccaaaatatgcctctaccattgttgtcagtaactgacagcagatcaggattagcttccctcatagcatttacgaactca |
12062142 |
T |
|
| Q |
301 |
attattccattctctgctgcatacaacatggcttcgtgtgctgaagctttcatgagctgttcataactaaattttccaatattttggctgaagtgtttca |
400 |
Q |
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| T |
12062141 |
actattccattctcggctgcatacaacatggcttcgtgtgctgaagctttaatgagctgttcataactaaattttccaatattttggctgaagtgtttca |
12062042 |
T |
|
| Q |
401 |
atattcccagaacttcataatgggcatatttttcatcatatattt |
445 |
Q |
| |
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| T |
12062041 |
atattcccagaacttcataatgggcatatttttcatcatatattt |
12061997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 12092056 - 12092382
Alignment:
| Q |
23 |
taaaccattgaatctctgtttgtatatgcattgcaggactcaatctgccattacgattagatgaagaaactaaaagagctgccgtgtgcagcaggttatt |
122 |
Q |
| |
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||||||||||||| ||| |||||| ||||| ||||||| |||||||||| |||| ||||||||| |||||||||||||||| |||||| || ||||| |
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| T |
12092056 |
taaaccattgaatttctttttgtacttgcatagcaggacccaatctgccactacggatagatgaaggaactaaaagagctgccatgtgcaatagattatt |
12092155 |
T |
|
| Q |
123 |
gcccaacacgtctgtgcgatatcgaaacatctccttctccaatccttttagaaagtatatgagttggaacacttttagtctgcgattctgaattgcatac |
222 |
Q |
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| | | || ||||||||||||| || |||||||||||||||||| || ||| | |||||||||||||| || | |||||||||| ||||||||||| |
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| T |
12092156 |
gtcaaccaagtctgtgcgatatttaatcatctccttctccaatccattgagagaatatatgagttggaaaacagatcttctgcgattcagaattgcatac |
12092255 |
T |
|
| Q |
223 |
caaaatatgcctctaccattgttgtcagtaactgacagcagatcaggattagcttccctcatagcatttatgaactcaattattccattctctgctgcat |
322 |
Q |
| |
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|||| ||||||||||||| |||| ||||| |||| || |||| ||||||||| | ||||||||||||||| || |||||||||||||| ||||||| |
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| T |
12092256 |
caaagtatgcctctaccactgttatcagtgactgcaagtagataaggattagcattcctcatagcatttatcaatgtaattattccattctgggctgcat |
12092355 |
T |
|
| Q |
323 |
acaacatggcttcgtgtgctgaagctt |
349 |
Q |
| |
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| ||||||||||| ||||||||||||| |
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| T |
12092356 |
ataacatggcttcatgtgctgaagctt |
12092382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 12112842 - 12113168
Alignment:
| Q |
23 |
taaaccattgaatctctgtttgtatatgcattgcaggactcaatctgccattacgattagatgaagaaactaaaagagctgccgtgtgcagcaggttatt |
122 |
Q |
| |
|
||||||||||||| ||| |||||| ||||| ||||||| | || ||||| ||| ||||||||| |||||||||||||||| |||||||||| ||||| |
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| T |
12112842 |
taaaccattgaatttctctttgtacttgcatagcaggaccccatatgccaccacggatagatgaaggaactaaaagagctgccatgtgcagcagattatt |
12112941 |
T |
|
| Q |
123 |
gcccaacacgtctgtgcgatatcgaaacatctccttctccaatccttttagaaagtatatgagttggaacacttttagtctgcgattctgaattgcatac |
222 |
Q |
| |
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| | | ||||||||||||| || |||||||||||||||||| || ||| | |||||||||||||| || | | |||||||||| ||||||||||| |
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| T |
12112942 |
atcaaccgagtctgtgcgatatttaatcatctccttctccaatccattgagagaatatatgagttggaaaacatatcttctgcgattcagaattgcatac |
12113041 |
T |
|
| Q |
223 |
caaaatatgcctctaccattgttgtcagtaactgacagcagatcaggattagcttccctcatagcatttatgaactcaattattccattctctgctgcat |
322 |
Q |
| |
|
|||| ||||||||||||| |||| ||||| |||| || |||| ||||||||| | ||||||||||||||| || |||||||||||||| ||||||| |
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| T |
12113042 |
caaagtatgcctctaccactgttatcagtgactgcaagtagataaggattagcattcctcatagcatttatcaatgtaattattccattctgggctgcat |
12113141 |
T |
|
| Q |
323 |
acaacatggcttcgtgtgctgaagctt |
349 |
Q |
| |
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| ||||||||||| ||||||||||||| |
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| T |
12113142 |
ataacatggcttcatgtgctgaagctt |
12113168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 12086447 - 12086773
Alignment:
| Q |
23 |
taaaccattgaatctctgtttgtatatgcattgcaggactcaatctgccattacgattagatgaagaaactaaaagagctgccgtgtgcagcaggttatt |
122 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |||||||| |||||||| ||| ||||||||| |||||||| |||||| ||||| || ||||| |
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| T |
12086447 |
taaaccattgaatttctctttgtccttgcatatcaggactccatctgccaccacggatagatgaaggaactaaaattgctgccacgtgcaacaaattatt |
12086546 |
T |
|
| Q |
123 |
gcccaacacgtctgtgcgatatcgaaacatctccttctccaatccttttagaaagtatatgagttggaacacttttagtctgcgattctgaattgcatac |
222 |
Q |
| |
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| | | |||||||||||||| || ||||||||||||| ||||||| ||| | | |||||||||||| || | | |||||||||| | ||||||||| |
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| T |
12086547 |
ttcaagcgagtctgtgcgatatctaatcatctccttctcccatcctttgagagaatttatgagttggaaaacatatcttctgcgattcagtattgcatac |
12086646 |
T |
|
| Q |
223 |
caaaatatgcctctaccattgttgtcagtaactgacagcagatcaggattagcttccctcatagcatttatgaactcaattattccattctctgctgcat |
322 |
Q |
| |
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|||| ||||| ||||||| |||| || | ||||| || |||| |||||| | | ||||||||||||||| || |||||||||||||| |||||| |
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| T |
12086647 |
caaagtatgcttctaccactgttatcgttgactgaaagtagataaggattgacattcctcatagcatttatcaatgtaattattccattctgggctgcac |
12086746 |
T |
|
| Q |
323 |
acaacatggcttcgtgtgctgaagctt |
349 |
Q |
| |
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|||| |||||||| ||||||||||||| |
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| T |
12086747 |
acaatatggcttcatgtgctgaagctt |
12086773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 11999205 - 11999129
Alignment:
| Q |
259 |
agcagatcaggattagcttccctcatagcatttatgaactcaattattccattctctgctgcatacaacatggcttc |
335 |
Q |
| |
|
|||| ||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
11999205 |
agcaaatcagaattagcatccctcattgcatttatgaactcaattattccattctgggctgcatacagtatggcttc |
11999129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 445
Target Start/End: Original strand, 12009619 - 12009797
Alignment:
| Q |
267 |
aggattagcttccctcatagcatttatgaactcaattattccattctctgctgcatacaacatggcttcgtgtgctgaagctttcatgagctgttcataa |
366 |
Q |
| |
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||||||||| |||||||| |||||||||||||| |||||||||| | | ||||| |||||| ||||| | || ||||| | |||||| | | | |
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| T |
12009619 |
aggattagcgtccctcatggcatttatgaactcgattattccatgttgggatgcatgcaacattgcttcatacgcggaagcctctttgagctttgaacta |
12009718 |
T |
|
| Q |
367 |
ctaaattttccaatattttggctgaagtgtttcaatattcccagaacttcataatgggcatatttttcatcatatattt |
445 |
Q |
| |
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|||||||||||| | || ||| ||||| |||||||||| | |||||||||||| | |||||||| ||||||||||| |
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|
| T |
12009719 |
ttaaattttccaacacttcggcagaagtaactcaatattcctataacttcataatgtgtatatttttgatcatatattt |
12009797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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