View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_25 (Length: 455)
Name: NF17117_low_25
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 36998765 - 36999194
Alignment:
| Q |
10 |
ataattctcagtggtagagtatgtggcggtccccgttccagtcgtccctgtggtgtggtggggctgacccatatgcccagccgcagcagtggtcgtctgt |
109 |
Q |
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| T |
36998765 |
ataattcccagtggtagagtatgtggcggtccccgttccagtcgtccctgtggtgtggtggggctgacccatatgcccagccgcagcagtggtcgtctgt |
36998864 |
T |
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| Q |
110 |
ttgaccgccgcattgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctctttttgcacaggat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998865 |
ttgaccgccgcattgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctctttttgcacaggat |
36998964 |
T |
|
| Q |
210 |
cacgtgctgtcatcttctcagtctggagataaattagttcaacacatgttaggaacaaacaacacaaatgtgacccataactagcacattgaaagaagaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998965 |
cacgtgctgtcatcttctcagtctggagataaattagttcaacacatgttaggaacaaacaacacaaatgtgacccataactagcacattgaaagaagaa |
36999064 |
T |
|
| Q |
310 |
aaaagagttcttcaaaagtatactatttttcctggaattataatgatttttaataccaacattttacattgaaatgcgaaggtgtgacatatttgctagc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36999065 |
aaaagagttcttcaaaagtatactatttttcctggaattataatgatttttaataccaacattttacattgaaatgcgaaggtgtgacatatttgctagc |
36999164 |
T |
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| Q |
410 |
tcacacaacattaaaaactatccttaacta |
439 |
Q |
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| T |
36999165 |
tcacacaacattaaaaactatccttaacta |
36999194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 36994070 - 36994182
Alignment:
| Q |
122 |
ttgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctctttttgcacaggatcacgtgctgtca |
221 |
Q |
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| T |
36994070 |
ttgtgttcacgcgccgcctctttatcaagctcagcctggttaaccctttcttctttcttttgggttgccatctctttttgcaaaggatcatgtgccgtca |
36994169 |
T |
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| Q |
222 |
tcttctcagtctg |
234 |
Q |
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||||||| ||||| |
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| T |
36994170 |
tcttctctgtctg |
36994182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 36988346 - 36988407
Alignment:
| Q |
173 |
tctttcttatgggttgccatctctttttgcacaggatcacgtgctgtcatcttctcagtctg |
234 |
Q |
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|||||||| |||||||||||||| ||||||| ||||||| |||| ||||||||||| ||||| |
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| T |
36988346 |
tctttcttttgggttgccatctccttttgcaaaggatcatgtgccgtcatcttctctgtctg |
36988407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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