View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_27 (Length: 449)
Name: NF17117_low_27
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_27 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 226 - 392
Target Start/End: Original strand, 31035899 - 31036066
Alignment:
| Q |
226 |
tcttaacattcatttccaattttgtcatgtacaattacattgtaccatgattcacataaggttttattttttgtgtcgttgaatccttaacctata--tg |
323 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
31035899 |
tcttaacattcattttcatttttgtcatgtacaattacattgtagcatgattcacataaggttttattttttgt-tcgttgaatccttaacctatatatg |
31035997 |
T |
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| Q |
324 |
gtagcatttgttgggttaaagaatcatcaaattctcctagcatttgcattaaagtatattaatgttcta |
392 |
Q |
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| T |
31035998 |
gtagcattttttgggttaaagaatcatcaaattctcctagcatttgcataaaagtatattaatgttcta |
31036066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 31035647 - 31035806
Alignment:
| Q |
26 |
tacaaagaagtttggaattccatacaatttcatgggttcaaagtaaaagaagatcaagttaactcatagatgttgatgttaacttaatcannnnnnnctc |
125 |
Q |
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| T |
31035647 |
tacaaagaagtttggaattccatacaatttcatgggttcgaaggaaaagaaaatcgagttaactcatagatattggtattaacttaatcatttttttctt |
31035746 |
T |
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| Q |
126 |
caaacctataaaattcaatcaaaatctcagatctccaaattgtattggctcaaataaaaa |
185 |
Q |
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| T |
31035747 |
caaacctataaaattcaatcaaaatctcagatctccaaattgtattggctcaaataaaaa |
31035806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 31104257 - 31104369
Alignment:
| Q |
126 |
caaacctataaaattcaatcaaaatctcagatctccaaattgtattggctcaaataaaaatccagaaaacaccaacattacataacttcatcaacttccc |
225 |
Q |
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| T |
31104257 |
caaacccataaaattcaatcaaaatcccaaacctccaaatcgtattgtctcaaataaaaatctagaaaacaccaacattacatatcttcatcaacttttc |
31104356 |
T |
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| Q |
226 |
tcttaacattcat |
238 |
Q |
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||||||||||||| |
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| T |
31104357 |
tcttaacattcat |
31104369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 31111297 - 31111409
Alignment:
| Q |
126 |
caaacctataaaattcaatcaaaatctcagatctccaaattgtattggctcaaataaaaatccagaaaacaccaacattacataacttcatcaacttccc |
225 |
Q |
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| T |
31111297 |
caaacctataaaattcaatcaaaatcttaaatctccacattctattggctcaaaaaaaaatcaagaaaaaaccaagattacatattttcatcaacttccc |
31111396 |
T |
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| Q |
226 |
tcttaacattcat |
238 |
Q |
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| T |
31111397 |
tcaaaacattcat |
31111409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 31057359 - 31057436
Alignment:
| Q |
161 |
caaattgtattggctcaaataaaaatccagaaaacaccaacattacataacttcatcaacttccctcttaacattcattt |
240 |
Q |
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| T |
31057359 |
caaattgtattgcct--aataaaaacccatgaaacaccaacattacatatcttcatcaactttcctcttaacattcattt |
31057436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 31035592 - 31035648
Alignment:
| Q |
37 |
ttggaattccatacaatttcatgggttcaaagtaaaagaagatcaagttaactcata |
93 |
Q |
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| T |
31035592 |
ttggaatcccatacaattttatgagttcaaagaaaaagaagatcgagttaactcata |
31035648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 15400 - 15311
Alignment:
| Q |
130 |
cctataaaattcaatcaaaatctcagatctccaaattgtattggctcaaataaaaatccagaaaacaccaacattacataacttcatcaa |
219 |
Q |
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| T |
15400 |
cctatcaaattcaatcaatatctcaatttttcaaattgtattggctctaataaaaatccaggaaacaccaacattgcatatcttcatcaa |
15311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 382
Target Start/End: Original strand, 42662181 - 42662282
Alignment:
| Q |
284 |
aggttttattttttgtgtcgttgaatccttaacctatatgg--tagc-atttgttgggttaaagaatcatcaaattctcctagcatttgcattaaagtat |
380 |
Q |
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|||||| || |||||||||||||||||||||| |||||||| |||| ||| | |||||| ||||| ||||||||||||| ||||||||| |||| || |
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| T |
42662181 |
aggtttgatattttgtgtcgttgaatccttaagctatatggtatagctttttctggggttagagaattttcaaattctcctaacatttgcataaaagaat |
42662280 |
T |
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| Q |
381 |
at |
382 |
Q |
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|| |
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| T |
42662281 |
at |
42662282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 382
Target Start/End: Original strand, 55641822 - 55641923
Alignment:
| Q |
284 |
aggttttattttttgtgtcgttgaatccttaacctatatgg--tagc-atttgttgggttaaagaatcatcaaattctcctagcatttgcattaaagtat |
380 |
Q |
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|||||| || |||||||||||||||||||||| |||||||| |||| ||| | |||||| ||||| ||||||||||||| ||||||||| |||| || |
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| T |
55641822 |
aggtttgatattttgtgtcgttgaatccttaagctatatggtatagctttttctggggttagagaattttcaaattctcctaacatttgcataaaagcat |
55641921 |
T |
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| Q |
381 |
at |
382 |
Q |
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|| |
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| T |
55641922 |
at |
55641923 |
T |
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