View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_29 (Length: 445)
Name: NF17117_low_29
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 10033129 - 10033565
Alignment:
| Q |
1 |
atgaataattgggctcctcctctcatagctgcagctctattttggctattatcaccaggaatgatttttcagcttccagggaagaattcaccattggagt |
100 |
Q |
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| T |
10033129 |
atgaataattgggctcctcctctcatagctgcagctttattttggctattatcaccaggaatgatttttcagcttccagggaagaattcaccattggagt |
10033228 |
T |
|
| Q |
101 |
ttatgaatatgaagacaactattgcatcaatttctgtacacactgttctttatggtttgcttctcatgttgttctttgttgttcttgatcttcatcttta |
200 |
Q |
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| T |
10033229 |
ttatgaatatgaagacaactattgcatcaatttttgtacacactgttctttatggtttgcttctcatgttgttctttgttgttcttgatcttcatcttta |
10033328 |
T |
|
| Q |
201 |
tatcacttgaagtagatcaagtgataataataatatatgttacttttgatttttcctttcatacttgttttcttgttcttggctcttaaagctaatttca |
300 |
Q |
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| T |
10033329 |
tatcacttgaagtagatcaagtgataataataatatatgttacttttgatttttcctttcatacttgttttcttgttcttggctcttaaagctaatttca |
10033428 |
T |
|
| Q |
301 |
agagtaatttgattgttgtttattcttggaaagtgttatatctaaataaagtatgtcatgttttctagtgaagtttatgttactataatgtaattttgtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10033429 |
agagtaatttgattgttgtttattcttggaaagtgttatatctaaataaagtatgtcatgttttctagtgaagtttatgttactataatgtaattttgtc |
10033528 |
T |
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| Q |
401 |
ttacataattcacatgatatttttcttcctttcttctc |
438 |
Q |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
10033529 |
ttacataattcacatgata-ttttcttcctttcttctc |
10033565 |
T |
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