View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_low_31 (Length: 444)

Name: NF17117_low_31
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_low_31
NF17117_low_31
[»] chr7 (5 HSPs)
chr7 (18-397)||(23186967-23187354)
chr7 (64-170)||(28733762-28733870)
chr7 (64-124)||(33887904-33887964)
chr7 (68-178)||(39316073-39316184)
chr7 (65-125)||(9097746-9097805)
[»] chr5 (7 HSPs)
chr5 (65-178)||(34032087-34032201)
chr5 (66-177)||(2816174-2816287)
chr5 (64-178)||(37885613-37885726)
chr5 (65-178)||(17098183-17098297)
chr5 (82-124)||(26407564-26407606)
chr5 (64-124)||(141866-141925)
chr5 (64-124)||(3758194-3758254)
[»] chr3 (6 HSPs)
chr3 (65-207)||(30082852-30082998)
chr3 (65-157)||(37708432-37708525)
chr3 (68-180)||(38457212-38457324)
chr3 (65-153)||(8703336-8703425)
chr3 (65-153)||(9055223-9055312)
chr3 (64-186)||(40392387-40392509)
[»] chr1 (5 HSPs)
chr1 (64-178)||(36621927-36622042)
chr1 (65-156)||(4521027-4521119)
chr1 (66-119)||(64883-64936)
chr1 (64-125)||(9221274-9221335)
chr1 (64-124)||(8836543-8836603)
[»] scaffold0009 (1 HSPs)
scaffold0009 (64-170)||(189063-189170)
[»] chr8 (9 HSPs)
chr8 (39-170)||(22209375-22209507)
chr8 (65-124)||(20279607-20279666)
chr8 (65-124)||(21066234-21066293)
chr8 (64-124)||(27776541-27776601)
chr8 (74-124)||(1576414-1576464)
chr8 (65-118)||(8108305-8108359)
chr8 (68-149)||(21307619-21307701)
chr8 (64-125)||(12782771-12782832)
chr8 (39-95)||(40298850-40298906)
[»] scaffold0192 (1 HSPs)
scaffold0192 (41-170)||(15900-16030)
[»] chr2 (7 HSPs)
chr2 (64-118)||(16717603-16717657)
chr2 (66-118)||(37617447-37617499)
chr2 (70-124)||(35312103-35312157)
chr2 (64-124)||(33275945-33276005)
chr2 (65-103)||(3882611-3882649)
chr2 (83-178)||(35477685-35477782)
chr2 (65-125)||(8964387-8964447)
[»] chr6 (2 HSPs)
chr6 (39-156)||(30509285-30509403)
chr6 (68-124)||(34921565-34921621)
[»] chr4 (9 HSPs)
chr4 (65-149)||(24369402-24369487)
chr4 (64-159)||(44670846-44670942)
chr4 (66-118)||(50086466-50086518)
chr4 (64-178)||(54700841-54700954)
chr4 (70-159)||(10095656-10095746)
chr4 (64-118)||(29352463-29352517)
chr4 (65-125)||(39274956-39275016)
chr4 (64-124)||(41956482-41956542)
chr4 (64-179)||(50774955-50775071)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 23187354 - 23186967
Alignment:
Q  18 atatacacatgtataatttatggtcttattaaccagtgtctctaatacactctttaagcattctaaaataaacaattactctttaataaaattaaatatt 117  Q
    |||||||| |||||||||||||||||||||||| |||||| | ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  23187354 atatacacctgtataatttatggtcttattaacgagtgtccccaatgcactctttaagcattttaaaataagcaattactctttaataaaattaaatatt 23187255  T
Q  118 tcaatttctaaacaatgattacatgtatttttaaaaatatttattatttatggatcttaaaagggtctcgaaggtactctttaacatttctctataattt 217  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||| |  ||||||    
T  23187254 tcaatttctaaacaataattacatgtatttttaaaaatatttactatttatggatcttaaaagtgtctcgaaggcactcgttaacatttcccagtaattt 23187155  T
Q  218 ataatttatagtcaacctcctatttttcttcggtcaatcgaccttgtttccacgaaaagttttatgaacttctgcgcaagaacattggaaactacgttcg 317  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23187154 ataatttatagtcaacctcctatttttcttcaatcaatcgaccttgtttccacgaaaagttttatgaagttctgcgcaagaacattggaaactacgttcg 23187055  T
Q  318 tgtgatatgacg--------taataataatcaatgattgatagagaattttatcgacactctctcgaagacaataatagtcaacgacc 397  Q
    ||||||||||||        |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23187054 tgtgatatgacgtaatgacgtaataataatcaatgattgatagagaattttatcgacaatctctcgaagacaataatagtcaacgacc 23186967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 28733870 - 28733762
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaa-ttaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttat 161  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||| ||||||||||  | ||| |  |||||||||||||| ||||||||||||||||      
T  28733870 acactctttaagcattttaaaataaacaattattctttaaaaaaagttaaatattttgaattccatgacaatgattacatgcatttttaaaaatattttc 28733771  T
Q  162 tatttatgg 170  Q
    |||||||||    
T  28733770 tatttatgg 28733762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 33887964 - 33887904
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    ||||||||||||||||| |||||||| ||||| ||||||| ||| | ||||||||||||||    
T  33887964 acactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattt 33887904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 39316073 - 39316184
Alignment:
Q  68 tctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttattattt 166  Q
    |||||||||||||||||||||  ||||| |||||| | || | ||||||||| ||||  || | ||| | |||||  ||||||||||||||||||| |||    
T  39316073 tctttaagcattctaaaataagtaattattctttattgaagtcaaatatttcgattttcaagataataagtacatacatttttaaaaatatttattgttt 39316172  T
Q  167 atggatcttaaa 178  Q
     ||| |||||||    
T  39316173 gtgggtcttaaa 39316184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 9097805 - 9097746
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 125  Q
    |||||||||||||| |||| ||||||||||| | || || ||||| |||||||||||||||    
T  9097805 cactctttaagcatactaatataaacaatta-ttttaaaaaaaatcaaatatttcaatttc 9097746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 34032201 - 34032087
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatta 163  Q
    ||||||||||||||||||||||||  ||||| ||||||| ||| ||||||||||||||||| ||  ||||||||||||| ||||||||||||| ||| ||    
T  34032201 cactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaatttcaaaggcaatgattacatgcatttttaaaaatacttacta 34032102  T
Q  164 tttatggatcttaaa 178  Q
     |||||| |||||||    
T  34032101 cttatgggtcttaaa 34032087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 2816174 - 2816287
Alignment:
Q  66 actctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaa-tttctaaacaatgattacatgta-tttttaaaaatatttatta 163  Q
    ||||||||||||||  |||| || |||||| ||||||| ||||| ||||||||||| |||| | |||||||||||||| | |||||  ||||||||| ||    
T  2816174 actctttaagcatttcaaaagaagcaattattctttaaaaaaatcaaatatttcaattttcaagacaatgattacatgcatttttttgaaatatttacta 2816273  T
Q  164 tttatggatcttaa 177  Q
    ||||||| ||||||    
T  2816274 tttatgggtcttaa 2816287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 37885613 - 37885726
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatt 162  Q
    ||||| ||||| |||| |||||||||||||||   ||||| |||||||||||||||||||| ||| | | | |||||| | ||||||| ||||| |||||    
T  37885613 acactttttaaacattttaaaataaacaattaggttttaa-aaaattaaatatttcaatttttaatatattaattacacgcatttttataaatacttatt 37885711  T
Q  163 atttatggatcttaaa 178  Q
    |||||| |||||||||    
T  37885712 atttat-gatcttaaa 37885726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 17098297 - 17098183
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatta 163  Q
    |||||||||| |||   ||||||| |||||| | ||||| ||| | ||||||||| ||||| || |||||||||||||  |||||||||||||| || ||    
T  17098297 cactctttaaacatcacaaaataagcaattattatttaaaaaagtcaaatatttcgatttccaagacaatgattacattcatttttaaaaatatctacta 17098198  T
Q  164 tttatggatcttaaa 178  Q
    ||||||  |||||||    
T  17098197 tttatgagtcttaaa 17098183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 26407606 - 26407564
Alignment:
Q  82 aaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  26407606 aaaataaaaaattattctttaataaaattaaatatttcaattt 26407564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 141866 - 141925
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    ||||||||||||||| | |||||||||||||| ||||| | |||| | |||||||||||||    
T  141866 acactctttaagcataccaaaataaacaattattctttta-aaaagtcaatatttcaattt 141925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 3758194 - 3758254
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    ||||||||||| |||| |||||||| |||||| ||||||| ||| | ||||||||| ||||    
T  3758194 acactctttaaacattttaaaataatcaattattctttaaaaaagtcaaatatttcgattt 3758254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 30082852 - 30082998
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaa--ttaaatatttcaatttctaaa-caatgattacatgtatttttaaaaatatttat 161  Q
    |||||||||||||||||||||||| || ||| ||||||| ||||  | ||||||||||||| |||||  |||||||||||| ||||||||||||| |||     
T  30082852 cactctttaagcattctaaaataagcagttattctttaaaaaaaagtcaaatatttcaattcctaaagaaatgattacatggatttttaaaaatacttac 30082951  T
Q  162 tatttatggatcttaaa-agggtctcgaaggtactctttaacatttc 207  Q
    ||||||| | ||||||| || ||| |||||  |||| ||||||||||    
T  30082952 tatttataggtcttaaagagtgtcccgaagacactcgttaacatttc 30082998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 37708432 - 37708525
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaa-tttctaaacaatgattacatgtatttttaaaaatat 157  Q
    ||||||||||||||  |||||||| |||||| ||||||| ||| ||||| ||||||| |||| |  || |||||||||||||||||| ||||||    
T  37708432 cactctttaagcatattaaaataagcaattagtctttaaaaaagttaaacatttcaattttcaatgcactgattacatgtatttttataaatat 37708525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 38457324 - 38457212
Alignment:
Q  68 tctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtatttttaaaaatatttattattt 166  Q
    ||||||||||||||| ||||| |||||| ||||||| ||||||||||||||  ||||  ||  || ||||||||||||||||   ||||| ||| |||||    
T  38457324 tctttaagcattctataataagcaattattctttaa-aaaattaaatattttgattttcaatgcattgattacatgtattttcgtaaatacttactattt 38457226  T
Q  167 atggatcttaaaag 180  Q
    |||| |||||||||    
T  38457225 atggttcttaaaag 38457212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 8703425 - 8703336
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaa 153  Q
    ||||| |||||||||||||||||| |||||  | ||||| ||| ||||||||||  ||||||||  |||| |||||||| ||||||||||    
T  8703425 cactcgttaagcattctaaaataagcaattgttatttaaaaaagttaaatattttgatttctaaggcaatcattacatgcatttttaaaa 8703336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 9055312 - 9055223
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaa 153  Q
    ||||| |||||||||||||||||| |||||  | ||||| ||| ||||||||||  ||||||||  |||| |||||||| ||||||||||    
T  9055312 cactcgttaagcattctaaaataagcaattgttatttaaaaaagttaaatattttgatttctaaggcaatcattacatgcatttttaaaa 9055223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 40392387 - 40392509
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatt 162  Q
    |||||||||||| ||| ||||| ||  ||||||||||||| ||| ||||||||||  ||||||||  || ||||||||| |||||| | ||||||||| |    
T  40392387 acactctttaagtattttaaaa-aagtaattactctttaaaaaagttaaatatttttatttctaatgcattgattacatatattttcataaatatttact 40392485  T
Q  163 atttatggatcttaaaagggtctc 186  Q
    | |||||   |||||||| |||||    
T  40392486 acttatgttccttaaaagtgtctc 40392509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 36621927 - 36622042
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtatttttaaaaatatttatt 162  Q
    ||||||||||| ||||  ||||||| |||||| ||||||| ||| ||||||||||  ||||| ||| ||||||||||||| ||||||||||||| |||||    
T  36621927 acactctttaaacatttcaaaataagcaattattctttaaaaaagttaaatattttgatttccaaaacaatgattacatgcatttttaaaaatacttatt 36622026  T
Q  163 atttatggatcttaaa 178  Q
    | |||||| |||||||    
T  36622027 acttatgggtcttaaa 36622042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 4521119 - 4521027
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaata 156  Q
    |||||||||||||| |||||| || | |||| ||||||| ||| ||||| ||||||||||| ||  || |||||||||||||||||| |||||    
T  4521119 cactctttaagcatactaaaacaagcgattattctttaaaaaagttaaacatttcaatttccaatgcattgattacatgtatttttataaata 4521027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 64936 - 64883
Alignment:
Q  66 actctttaagcattctaaaataaacaattactctttaataaaattaaatatttc 119  Q
    ||||||||| |||||||||||||||||||| ||||||| ||  |||||||||||    
T  64936 actctttaaacattctaaaataaacaattattctttaaaaacgttaaatatttc 64883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 9221335 - 9221274
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 125  Q
    |||||||||||  ||| ||||||||||||||| ||||||  ||| ||||||||||| |||||    
T  9221335 acactctttaactattttaaaataaacaattattctttagaaaagttaaatatttcgatttc 9221274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 8836603 - 8836543
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    ||||||||||||||||   ||||||||||||| ||||||| ||| | ||||||||| ||||    
T  8836603 acactctttaagcatttcgaaataaacaattattctttaaaaaagtcaaatatttcgattt 8836543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 189063 - 189170
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatt 162  Q
    |||||||||||||||| |||||||| |||||| ||||||| ||| ||||||||||| |||||||| ||| | ||||||  |||||| | ||||| |||||    
T  189063 acactctttaagcattttaaaataagcaattattctttaaaaaagttaaatatttctatttctaatacattaattacacatattttcataaatacttatt 189162  T
Q  163 atttatgg 170  Q
    ||||||||    
T  189163 atttatgg 189170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 22209375 - 22209507
Alignment:
Q  39 ggtcttattaaccagtgtctctaatacactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgatt 137  Q
    |||||||||||| ||||||||    |||||||||||||||| ||||| || |||||| || |||| ||| ||||||||||  ||||| || ||| |||||    
T  22209375 ggtcttattaacaagtgtctccgggacactctttaagcattttaaaagaagcaattattccttaaaaaagttaaatattttgatttccaagacattgatt 22209474  T
Q  138 acatgtatttttaaaaatatttattatttatgg 170  Q
    |||| |||||| | ||||| ||| |||||||||    
T  22209475 acatatattttcataaatacttactatttatgg 22209507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 20279666 - 20279607
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    |||||||||||||||||||||||| |||||| ||||| | ||| | ||||||||||||||    
T  20279666 cactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattt 20279607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 21066293 - 21066234
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    |||||||||||||||||||||||| |||||| ||||| | ||| | ||||||||||||||    
T  21066293 cactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattt 21066234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 27776541 - 27776601
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    ||||||||||| |||| |||||||||| |||| | ||||| |||||||||||||| |||||    
T  27776541 acactctttaaacattttaaaataaacgattattatttaaaaaaattaaatattttaattt 27776601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 1576464 - 1576414
Alignment:
Q  74 agcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    |||||||||||||||||||||| ||| ||| |||| |||||||||| ||||    
T  1576464 agcattctaaaataaacaattattctgtaaaaaaaataaatatttcgattt 1576414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 8108359 - 8108305
Alignment:
Q  65 cactctttaagcattctaaaataaacaa-ttactctttaataaaattaaatattt 118  Q
    |||||||||||||||||||||||||||| ||| || |||| ||| ||||||||||    
T  8108359 cactctttaagcattctaaaataaacaagttattcattaaaaaagttaaatattt 8108305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 21307619 - 21307701
Alignment:
Q  68 tctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtattttt 149  Q
    ||||||| |||||||||||||||||||  |||| || ||| | ||||||||  ||||| ||| || |||||||||||||||||    
T  21307619 tctttaaacattctaaaataaacaatttttcttaaaaaaattaaaatatttagatttcaaaatcattgattacatgtattttt 21307701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 12782771 - 12782832
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 125  Q
    ||||||||||||||| ||||||||  |||||| ||||||| ||| || |||||||| |||||    
T  12782771 acactctttaagcatactaaaatatgcaattattctttaaaaaagttgaatatttcgatttc 12782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 40298850 - 40298906
Alignment:
Q  39 ggtcttattaaccagtgtctctaatacactctttaagcattctaaaataaacaatta 95  Q
    |||||| ||||| |||||| |||  |||||||||||||||| |||||||| ||||||    
T  40298850 ggtcttgttaacgagtgtccctatgacactctttaagcattataaaataagcaatta 40298906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 16030 - 15900
Alignment:
Q  41 tcttattaaccagtgtctctaatacactctttaagcattctaaaataaacaattactctttaataaaattaaatatttc-aatttctaaacaatgattac 139  Q
    |||| ||||| ||||| |||| |||||||||||| |||| |||||| || ||||| |||| || ||  ||||||||||| | |||| ||||| ||||| |    
T  16030 tcttgttaacgagtgtttctagtacactctttaaacattttaaaattaataattattcttgaaaaatgttaaatatttcgattttcaaaacattgattgc 15931  T
Q  140 atgtatttttaaaaatatttattatttatgg 170  Q
    ||   |||||||| |||||||||||||||||    
T  15930 ataattttttaaatatatttattatttatgg 15900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 16717603 - 16717657
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatattt 118  Q
    |||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||    
T  16717603 acactctttaagcattctaaaataagtaattattctttaaaaaaattaaatattt 16717657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 37617499 - 37617447
Alignment:
Q  66 actctttaagcattctaaaataaacaattactctttaataaaattaaatattt 118  Q
    |||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||    
T  37617499 actctttaagcattttaaaataaataattattctttaaaaaaattaaatattt 37617447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 35312103 - 35312157
Alignment:
Q  70 tttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    ||||||||||||||||||||||| |  ||||||| |||||||||||||| |||||    
T  35312103 tttaagcattctaaaataaacaaattttctttaaaaaaattaaatattttaattt 35312157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 33276005 - 33275945
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    |||||||||||||||||||||| ||  ||||| | ||||| ||| ||||||||||||||||    
T  33276005 acactctttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattt 33275945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 3882611 - 3882649
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaa 103  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  3882611 cactctttaagcattctaaaataagcaattattctttaa 3882649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 35477782 - 35477685
Alignment:
Q  83 aaataaacaattactctttaataaaatt-aaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttattatttatggatcttaaa 178  Q
    |||||| |||||| ||||||| |||| | ||||||||| ||||| || |||||||| ||||| ||||||||||||| ||| || |||| | |||||||    
T  35477782 aaataagcaattattctttaaaaaaagtcaaatatttcgatttccaagacaatgatgacatgcatttttaaaaatacttactacttataggtcttaaa 35477685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 8964387 - 8964447
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 125  Q
    |||| ||||||||||||||| |||  ||||| ||||||| ||| | |||||||||||||||    
T  8964387 cactgtttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttc 8964447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 30509285 - 30509403
Alignment:
Q  39 ggtcttattaaccagtgtctctaatacactctttaagcattctaaaataaacaattactctttaataaaattaaatatttc-aatttctaaacaatgatt 137  Q
    |||||| ||||| ||||||||    ||||||||||||||| | ||||||| |||||| ||||||| ||||| ||| ||||| | |||| |  || |||||    
T  30509285 ggtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgatt 30509384  T
Q  138 acatgtatttttaaaaata 156  Q
    ||||||||||||| |||||    
T  30509385 acatgtatttttataaata 30509403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 34921565 - 34921621
Alignment:
Q  68 tctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    |||||| |||||||||||||| |||||| ||||||| ||| |||||||||| |||||    
T  34921565 tctttaggcattctaaaataatcaattattctttaaaaaagttaaatattttaattt 34921621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 24369402 - 24369487
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtattttt 149  Q
    |||||||||| ||| |||||||||||||||| ||||||  ||| | ||| ||||||||||| ||| || |||||| ||||||||||    
T  24369402 cactctttaaacatactaaaataaacaattattctttataaaagtcaaacatttcaatttccaaagcactgattatatgtattttt 24369487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 44670942 - 44670846
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatattt 159  Q
    |||| |||||||||| |||||| ||| |||||   ||||| ||||||||||||||| ||||| ||  |||| ||||||| |||||||| ||||||||    
T  44670942 acacactttaagcatactaaaacaaataattatcttttaaaaaaattaaatatttcgatttccaatgcaataattacatatatttttataaatattt 44670846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 50086518 - 50086466
Alignment:
Q  66 actctttaagcattctaaaataaacaattactctttaataaaattaaatattt 118  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||| ||||||||    
T  50086518 actctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattt 50086466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 54700954 - 54700841
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtatttttaaaaatatttatt 162  Q
    |||||||||||||||| ||||||||  ||||| |||| ||  || | ||||||||  ||||| ||  ||||||||||||| ||||||||||||| ||| |    
T  54700954 acactctttaagcattttaaaataagtaattattcttaaa--aagtcaaatattttgatttccaaggcaatgattacatgcatttttaaaaatacttact 54700857  T
Q  163 atttatggatcttaaa 178  Q
    | |||||| |||||||    
T  54700856 acttatgggtcttaaa 54700841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 10095746 - 10095656
Alignment:
Q  70 tttaagcattctaaaataaacaattactctttaataaaattaaatatttc-aatttctaaacaatgattacatgtatttttaaaaatattt 159  Q
    ||||| ||| ||||||||||||||||   ||||| ||||| ||||||||| | |||| |  ||||||||||||| ||||||| ||||||||    
T  10095746 tttaaacatactaaaataaacaattatcttttaaaaaaatcaaatatttcgattttcaatgcaatgattacatgcatttttataaatattt 10095656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 29352463 - 29352517
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatattt 118  Q
    ||||||||||| ||||||||||||| |||||| ||||| | ||||| ||||||||    
T  29352463 acactctttaatcattctaaaataagcaattattcttttaaaaaataaaatattt 29352517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 39274956 - 39275016
Alignment:
Q  65 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 125  Q
    |||| ||||||||||| ||| |||||||||| | ||| | ||||| |||||||||||||||    
T  39274956 cactatttaagcattcaaaagtaaacaattatttttttaaaaaatcaaatatttcaatttc 39275016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 41956542 - 41956482
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 124  Q
    |||||||||||||| || |||||||  || || ||||||| ||| ||||||||||||||||    
T  41956542 acactctttaagcaatccaaaataagaaagtattctttaagaaatttaaatatttcaattt 41956482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 50774955 - 50775071
Alignment:
Q  64 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatt 162  Q
    ||||| |||||| ||||||||||||  ||||| ||||||| ||| ||||||||||  ||||  || | | ||||||||  |||||| | |||||||||||    
T  50774955 acactttttaagtattctaaaataagtaattattctttaaaaaagttaaatattttgattttcaacatattgattacacatattttcataaatatttatt 50775054  T
Q  163 atttatggatcttaaaa 179  Q
    | |||||  ||||||||    
T  50775055 acttatgattcttaaaa 50775071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University