View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_38 (Length: 395)
Name: NF17117_low_38
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 46696102 - 46695737
Alignment:
| Q |
18 |
acttgtaaaatctttttcctagtttatgttgtttatgattttgaattacgataattgatcgatgtttctgataactctattattcattgctaggaataac |
117 |
Q |
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| T |
46696102 |
acttgtaaaatctttttcctagtttatgttgtttatgattttgaattacgataattgatcgatgtttctgataactctattattcattgctaggaataac |
46696003 |
T |
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| Q |
118 |
cttttggacaaatcaatgcataaagtttcatctgggaatgtaaataaaatatattcacatgaagaagctcttaagaattcttctcatgcacgtcgtcatt |
217 |
Q |
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| T |
46696002 |
cttttggacaaatcaatgcataaagtttcatctgggaatgtaaataaaatatattcacatgaagaagctcttaagaattcttctcatgcaagtcgtcatt |
46695903 |
T |
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| Q |
218 |
caagtgagcgacatcatcctcttggattacttggcaagaaagattcagttgagggtggaacagttattcgagaagtaggtcnnnnnnntactaataaaag |
317 |
Q |
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| T |
46695902 |
caagtgagcgacatcatcctcttggattacttggcaagaaagattcagttgagggtggaacagttattcgagaagtaggtcaaaaaaatactaataaaag |
46695803 |
T |
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| Q |
318 |
tcggaacaatcttgcaaatgttgctttaatggatagtaatccaattcagagaaagggtgatgatga |
383 |
Q |
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| T |
46695802 |
tcggaacaatcttgcaaatgttgctttaatggatattaatccaattcagagaaagggtgatgatga |
46695737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 46704895 - 46704849
Alignment:
| Q |
323 |
acaatcttgcaaatgttgctttaatggatagtaatccaattcagaga |
369 |
Q |
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| T |
46704895 |
acaatcttgccaatgttgctttaatggatagaaatcaaattaagaga |
46704849 |
T |
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