View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_low_39 (Length: 393)

Name: NF17117_low_39
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_low_39
NF17117_low_39
[»] chr1 (10 HSPs)
chr1 (1-378)||(16271990-16272368)
chr1 (297-377)||(16272418-16272498)
chr1 (98-170)||(49094374-49094446)
chr1 (99-170)||(43387843-43387914)
chr1 (105-178)||(16918394-16918467)
chr1 (134-185)||(37192505-37192556)
chr1 (133-178)||(25560597-25560642)
chr1 (98-177)||(15568246-15568325)
chr1 (99-178)||(26206892-26206971)
chr1 (134-180)||(37298081-37298127)
[»] chr7 (4 HSPs)
chr7 (99-222)||(25618935-25619061)
chr7 (99-222)||(37254234-37254360)
chr7 (105-178)||(23911301-23911374)
chr7 (134-180)||(18530021-18530067)
[»] chr2 (3 HSPs)
chr2 (134-218)||(14439267-14439351)
chr2 (134-185)||(11000528-11000579)
chr2 (107-177)||(12645021-12645091)
[»] chr4 (12 HSPs)
chr4 (134-180)||(20002229-20002275)
chr4 (98-170)||(12697288-12697360)
chr4 (137-222)||(5142933-5143021)
chr4 (98-178)||(4548804-4548884)
chr4 (137-177)||(5147353-5147393)
chr4 (98-178)||(8360603-8360683)
chr4 (98-170)||(41973615-41973687)
chr4 (99-178)||(24506215-24506294)
chr4 (98-177)||(55726178-55726257)
chr4 (133-175)||(19468480-19468522)
chr4 (98-177)||(2822622-2822701)
chr4 (134-171)||(46145185-46145222)
[»] chr8 (9 HSPs)
chr8 (105-178)||(20823778-20823851)
chr8 (134-180)||(2169851-2169897)
chr8 (107-177)||(29733535-29733605)
chr8 (99-180)||(43269926-43270007)
chr8 (107-171)||(28415629-28415693)
chr8 (99-178)||(17698958-17699037)
chr8 (107-177)||(10565519-10565589)
chr8 (105-222)||(13199607-13199725)
chr8 (98-174)||(25089863-25089939)
[»] chr6 (8 HSPs)
chr6 (105-178)||(17579665-17579738)
chr6 (135-222)||(20883568-20883658)
chr6 (105-178)||(14514141-14514214)
chr6 (98-178)||(214878-214958)
chr6 (99-178)||(10929889-10929968)
chr6 (134-222)||(11461925-11462017)
chr6 (133-178)||(21630694-21630739)
chr6 (99-178)||(34714120-34714199)
[»] chr5 (6 HSPs)
chr5 (105-178)||(8300767-8300840)
chr5 (105-178)||(25858009-25858082)
chr5 (133-183)||(10773961-10774011)
chr5 (134-180)||(18359673-18359719)
chr5 (99-178)||(33385959-33386038)
chr5 (133-178)||(27766553-27766598)
[»] chr3 (9 HSPs)
chr3 (98-170)||(7031608-7031680)
chr3 (98-170)||(11203294-11203366)
chr3 (99-178)||(30695928-30696007)
chr3 (134-185)||(35214949-35215000)
chr3 (136-222)||(1680661-1680749)
chr3 (99-170)||(12342820-12342891)
chr3 (98-169)||(29524339-29524410)
chr3 (99-178)||(33496024-33496103)
chr3 (134-186)||(19890190-19890242)
[»] scaffold0178 (1 HSPs)
scaffold0178 (134-185)||(16882-16933)
[»] scaffold0472 (1 HSPs)
scaffold0472 (98-178)||(7395-7475)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 16271990 - 16272368
Alignment:
1 ttatatcaaatttatatgttgttggtgtttgaaaaagataatcatagtttattataatttgaaagttacgtattttacagctataannnnnnnnnnn-ga 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||            ||    
16271990 ttatatcaaatttatatgttgttgctgtttgaaaaagataatcatagtttattacaatttgaaagttacgtattttacaactataattttttttttttga 16272089  T
100 agaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatctcaaagttacaata 199  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
16272090 agaatcaaaaataaaatatattaccaaaaaacatgtaattgttgaagcacaagccgtgccataacaatcacgaaaagatcagaatctcaaagttacaata 16272189  T
200 aaatcaatcgatgcccatacatacaatttgaaatagtttgcagctgtaattttaatcaaataattttctacaatttgaaagttacaatgtcaatacttat 299  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| ||||    
16272190 aaatcaatcgatacccatacatacaatttgaaatagtttgcagctataactttaatcaaataatttgctacaatttgaaagttacaatgtcaatagttat 16272289  T
300 aattttagtcaaaataaatttgttgtaaaaaataaatttataatttacatactttaacgcaatgaaaatgagcacatac 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
16272290 aattttagtcaaaataaatttgttgtaaaaaataaatttataatttacatactttaacacaatgaaaataagcacatac 16272368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 16272418 - 16272498
Alignment:
297 tataattttagtcaaaataaatttgttgtaaaaaataaatttataatttacatactttaacgcaatgaaaatgagcacata 377  Q
    ||||||||||||||||||| | || ||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||    
16272418 tataattttagtcaaaatataatttttgtaaaaactaagtttataatttacatactttaacacaatgaaaatgaggacata 16272498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 49094374 - 49094446
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcac 170  Q
    |||||| ||||||||||||||||||| | |||   |||||||||||||||||||||||||||| |||||||||    
49094374 gaagaaacaaaaatgaaatatattactataaacactgtaattgttgaagcacaagacgtgccaaaacaatcac 49094446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 43387843 - 43387914
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcac 170  Q
    ||||| |||||||| |||||||||| |||||   |||||||||||||||||||||||||||| |||||||||    
43387843 aagaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcac 43387914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 16918467 - 16918394
Alignment:
105 caaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||||| |||||||||| |||||   ||||||||||||||||||||||||| || ||||||||| |||||||    
16918467 caaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgtcaaaacaatcacaaaaagat 16918394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 37192556 - 37192505
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatc 185  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
37192556 gtaattgttgaagtacaagacgtgccctaacaatcacgaaaagatcaaaatc 37192505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 25560597 - 25560642
Alignment:
133 tgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||    
25560597 tgtaattgttgaagcacaagacgtgctataacaatcacggaaagat 25560642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 15568246 - 15568325
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaaga 177  Q
    |||||| | |||||||| ||||||||||  ||  | |||||||| |||||||||| |||||||||||||||||| |||||    
15568246 gaagaaaccaaaatgaattatattaccatgaacaacgtaattgtcgaagcacaaggcgtgccataacaatcacggaaaga 15568325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 26206971 - 26206892
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||| |||||||| |||||||||| |  ||   |||||||||||||||||||||| ||||| ||||||||| |||||||    
26206971 aagaaacaaaaatggaatatattactatgaatactgtaattgttgaagcacaagacatgccaaaacaatcacaaaaagat 26206892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 37298127 - 37298081
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatca 180  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||    
37298127 gtaatagttgaagcacaagaagtgccataacaatcgcgaaaagatca 37298081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 25618935 - 25619061
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatc---tcaaagttac 195  Q
    ||||| |||||||| |||||||||| | |||  | |||||||||||||||||||||||| |||| ||||||||||||||||| ||||   ||| | ||||    
25618935 aagaaacaaaaatggaatatattactataaacaacgtaattgttgaagcacaagacgtgtcataccaatcacgaaaagatcaaaatcctgtcagaattac 25619034  T
196 aataaaatcaatcgatgcccatacata 222  Q
    |  ||| ||||||||| ||||||||||    
25619035 atcaaagtcaatcgatacccatacata 25619061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 37254234 - 37254360
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatc---tcaaagttac 195  Q
    ||||| |||||||| |||||||||| |  |||   |||||| ||||||| ||| |||||||||||||||||||||||||||| ||||   ||||| ||||    
37254234 aagaaacaaaaatggaatatattactatgaaaaccgtaattattgaagcccaaaacgtgccataacaatcacgaaaagatcaaaatcctgtcaaaattac 37254333  T
196 aataaaatcaatcgatgcccatacata 222  Q
    |  ||| ||||||||| ||||||||||    
37254334 atcaaagtcaatcgatacccatacata 37254360  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 23911301 - 23911374
Alignment:
105 caaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||||||||||||||||| |||||   | ||||||||||| |||||||||||||| ||||||||| |||||||    
23911301 caaaaatgaaatatattactaaaaacactataattgttgaaacacaagacgtgccaaaacaatcacaaaaagat 23911374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 18530021 - 18530067
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatca 180  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||    
18530021 gtaattgttgaagcacaaaacgtgtcataacaattacgaaaagatca 18530067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 14439267 - 14439351
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatctcaaagttacaataaaatcaatcgatgcccata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||||  |||   ||||||||||||||    
14439267 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcacaaccccaaaattacatcaaagataatcgatgcccata 14439351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 11000579 - 11000528
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatc 185  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||| ||||    
11000579 gtaattgttgaagcacaagacgtgtcataacaatcacaaaaagatcacaatc 11000528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 12645021 - 12645091
Alignment:
107 aaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaaga 177  Q
    |||||||| ||||||||||  ||  | ||||||||||||||||||| |||||||||||||||||| |||||    
12645021 aaaatgaattatattaccatgaacaacgtaattgttgaagcacaaggcgtgccataacaatcacggaaaga 12645091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 20002229 - 20002275
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
20002229 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatca 20002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 12697288 - 12697360
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcac 170  Q
    |||||| |||||||| |||||||||| | |||   |||||||||||||||||||||||||||| |||||||||    
12697288 gaagaaacaaaaatggaatatattacgataaacactgtaattgttgaagcacaagacgtgccaaaacaatcac 12697360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 5142933 - 5143021
Alignment:
137 attgttgaagcacaagacgtgccataacaatcacgaaaagatcagaa---tctcaaagttacaataaaatcaatcgatgcccatacata 222  Q
    ||||||||||||||||||||||||||||||| | |||||||||| ||   | ||||| |||||  ||| ||||||||| ||||||||||    
5142933 attgttgaagcacaagacgtgccataacaattatgaaaagatcaaaattctgtcaaaattacatcaaagtcaatcgatacccatacata 5143021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 4548884 - 4548804
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||| |||||||| |||||||||| |  ||   ||||||||||||||||||||||||| || ||||||||| |||||||    
4548884 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgtcaaaacaatcacaaaaagat 4548804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 5147353 - 5147393
Alignment:
137 attgttgaagcacaagacgtgccataacaatcacgaaaaga 177  Q
    ||||||||||||||||||||||||||||||||| |||||||    
5147353 attgttgaagcacaagacgtgccataacaatcaagaaaaga 5147393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 8360603 - 8360683
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||| |||||||| |||||||||| |  ||   ||||||||||||||||||||| |||||| ||||||||| |||||||    
8360603 gaagaaacaaaaatggaatatattactatgaacattgtaattgttgaagcacaagatgtgccaaaacaatcaccaaaagat 8360683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 41973615 - 41973687
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcac 170  Q
    |||||| |||||||| |||||||||| |  ||   |||||||||||||||||||||||||||| |||||||||    
41973615 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcac 41973687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 24506294 - 24506215
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||| |||||||| |||||||||| |  ||   ||| |||||||||||||||||||||||| ||||||||| |||||||    
24506294 aagaaacaaaaatggaatatattactatgaacactgtgattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 24506215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 55726257 - 55726178
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaaga 177  Q
    |||||| | |||||||| ||||||||||  ||  |  |||||||||||||||||| |||||||||||||||||| |||||    
55726257 gaagaaaccaaaatgaattatattaccatgaacaacataattgttgaagcacaaggcgtgccataacaatcacggaaaga 55726178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 19468522 - 19468480
Alignment:
133 tgtaattgttgaagcacaagacgtgccataacaatcacgaaaa 175  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
19468522 tgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaa 19468480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 2822701 - 2822622
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaaga 177  Q
    |||||| | |||||||||||||||| ||| ||    |||||||||  |||||||| ||||||| ||||||||||||||||    
2822701 gaagaaactaaaatgaaatatattaacaagaatatcgtaattgttatagcacaaggcgtgccaaaacaatcacgaaaaga 2822622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 46145185 - 46145222
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacg 171  Q
    |||||||||| ||||||||| |||||||||||||||||    
46145185 gtaattgttgcagcacaagatgtgccataacaatcacg 46145222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 20823778 - 20823851
Alignment:
105 caaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||||| |||||||||| |||||   |||||||||||||||||||||||||||| ||||||||| |||||||    
20823778 caaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 20823851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 2169851 - 2169897
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatca 180  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
2169851 gtaattgttgaagcataagacgtgccataacaatcacgaaaagatca 2169897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 29733605 - 29733535
Alignment:
107 aaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaaga 177  Q
    |||||||||||||||||||||||    |||||||||  |||||||||||||||| ||||||||||||||||    
29733605 aaaatgaaatatattaccaaaaataccgtaattgttatagcacaagacgtgccaaaacaatcacgaaaaga 29733535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 43269926 - 43270007
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagatca 180  Q
    ||||| |||||||| |||||||||| |  ||   ||||||||||||||||||||||||| ||||||||| ||||||||||||    
43269926 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgtcataacaattacgaaaagatca 43270007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 28415629 - 28415693
Alignment:
107 aaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacg 171  Q
    |||||||| ||||||||||| ||  | |||||||||| |||||||| ||||||||||||||||||    
28415629 aaaatgaattatattaccaagaacaacgtaattgttgcagcacaaggcgtgccataacaatcacg 28415693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 17698958 - 17699037
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||| |||||||| |||||||||| |  ||   ||||||||||||||||||| |||||||| ||||||||| |||||||    
17698958 aagaaacaaaaatggaatatattactatgaatactgtaattgttgaagcacaaaacgtgccaaaacaatcacaaaaagat 17699037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 10565589 - 10565519
Alignment:
107 aaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaaga 177  Q
    |||||||| ||||||||||  ||  | ||||||||||||||||||| ||| |||||||||||||| |||||    
10565589 aaaatgaattatattaccacgaacaacgtaattgttgaagcacaaggcgttccataacaatcacggaaaga 10565519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 13199607 - 13199725
Alignment:
105 caaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatc---tcaaagttacaataaa 201  Q
    |||||||||| ||||||| || |||  | ||||||||||||||||||| |||||| ||||||||||| ||||| ||  |||   ||||| |||||| |||    
13199607 caaaaatgaattatattatcataaataacgtaattgttgaagcacaaggcgtgcc-taacaatcacggaaagagcaacatcctgtcaaa-ttacaacaaa 13199704  T
202 atcaatcgatgcccatacata 222  Q
     ||||||||||| ||||||||    
13199705 gtcaatcgatgctcatacata 13199725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 25089863 - 25089939
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaa 174  Q
    |||||| | |||||||| |||||||| || ||   ||||||||||  |||||||| ||||||| |||||||||||||    
25089863 gaagaaactaaaatgaattatattactaagaacactgtaattgttatagcacaaggcgtgccaaaacaatcacgaaa 25089939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 17579738 - 17579665
Alignment:
105 caaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||||| |||||||||| |||||   |||||||||||||||||||||||||||| ||||||||| |||||||    
17579738 caaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 17579665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 20883658 - 20883568
Alignment:
135 taattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaa---tctcaaagttacaataaaatcaatcgatgcccatacata 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||   | ||||| |||||  ||| ||||||||| ||||||||||    
20883658 taattgttgaagcacaagacgtgccatatcaatcacgaaaagatcaaaaccctatcaaaattacatcaaagtcaatcgatacccatacata 20883568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 14514214 - 14514141
Alignment:
105 caaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||||| |||||||||| |||||   ||||||||||||||||||||||||| || ||||||||| |||||||    
14514214 caaaaatggaatatattactaaaaatactgtaattgttgaagcacaagacgtggcaaaacaatcacaaaaagat 14514141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 214878 - 214958
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||| |||||||| |||||||||| |  ||   |||||||||||||||||||||||||||| ||||||||| |||||||    
214878 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 214958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 10929968 - 10929889
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||| |||||||| |||||||||| |  ||   |||||||||||||||||||||||||||| ||||||||| |||||||    
10929968 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 10929889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 11461925 - 11462017
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacg-aaaagatcagaatc---tcaaagttacaataaaatcaatcgatgcccatacata 222  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||| ||||   ||||| |||||  ||| ||||||||| ||||||||||    
11461925 gtaattgatgaagcacaagacgtgccataacaatcacgaaaaaaatcaaaatcctgtcaaaattacatcaaagtcaatcgatacccatacata 11462017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 21630739 - 21630694
Alignment:
133 tgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||    
21630739 tgtaattgttgaagcacaagacatgccaaaacaatcacaaaaagat 21630694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 34714199 - 34714120
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaaca-tgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||| |||||||| |||||||||| ||  |||| ||||| ||||||||||||||||||| || ||||||||| |||||||    
34714199 aagaaacaaaaatggaatatattac-aatgaacactgtaagtgttgaagcacaagacgtggcaaaacaatcaccaaaagat 34714120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 8300840 - 8300767
Alignment:
105 caaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||||| |||||||||| |||||   |||||||||||||||||||||||||||| ||||||||| |||||||    
8300840 caaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 8300767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 25858082 - 25858009
Alignment:
105 caaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||||| |||||||||| |||||   |||||||||||||||||||||||||||| ||||||||| |||||||    
25858082 caaaaatgtaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 25858009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 10773961 - 10774011
Alignment:
133 tgtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaa 183  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| ||||    
10773961 tgtaattgttgaagcacaagacgtgccaaaacaatcaccaaaagattagaa 10774011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 18359719 - 18359673
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatca 180  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||    
18359719 gtaattgttgaagcacaagacgtgccataacaattacgaaaatatca 18359673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 33386038 - 33385959
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||| |||||||| |||||||||| |  ||   |||||||||||||||| ||||||||||| ||||||||| |||||||    
33386038 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcataagacgtgccaaaacaatcacaaaaagat 33385959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 27766553 - 27766598
Alignment:
133 tgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||||||||| ||||||||||||| || ||||||||| |||||||    
27766553 tgtaattgttgtagcacaagacgtgtcaaaacaatcacaaaaagat 27766598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 7031680 - 7031608
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcac 170  Q
    |||||| |||||||| |||||||||| |||||   |||||||||||||||||||||||||||| |||||||||    
7031680 gaagaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcac 7031608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 11203294 - 11203366
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcac 170  Q
    |||||| |||||||| |||||||||| | |||   |||||||||||||||||||||||||||| |||||||||    
11203294 gaagaaacaaaaatggaatatattactataaacactgtaattgttgaagcacaagacgtgccacaacaatcac 11203366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 30696007 - 30695928
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||| |||||||| |||||||||| |  ||   |||||||||||||||||||||||||||| ||||||||| |||||||    
30696007 aagaaacaaaaatggaatatattactatgaacattgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 30695928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 35215000 - 35214949
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatc 185  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
35215000 gtaattgttgaagcacaagatgtgtcataacaatcacgaaaagatcacaatc 35214949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 1680749 - 1680661
Alignment:
136 aattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatc---tcaaagttacaataaaatcaatcgatgcccatacata 222  Q
    ||||||||||||||||| |||||||||||||||||  ||||| ||  |||   ||||| |||||| ||| ||||||||||||||||||||    
1680749 aattgttgaagcacaaggcgtgccataacaatcacagaaagagcaacatcctgtcaaa-ttacaacaaagtcaatcgatgcccatacata 1680661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 12342891 - 12342820
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcac 170  Q
    ||||| |||||||| |||||||||| |  ||   |||||||||||||||||||||||||||| |||||||||    
12342891 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcac 12342820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 29524410 - 29524339
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatca 169  Q
    |||||| |||||||| |||||||||| |  ||   |||||||||||||||||||||||||||| ||||||||    
29524410 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccacaacaatca 29524339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 33496024 - 33496103
Alignment:
99 aagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    ||||| |||||||| |||||||||| |  ||   |||||| ||||||||||||||||||||| ||||||||| |||||||    
33496024 aagaaacaaaaatggaatatattactatgaacactgtaatggttgaagcacaagacgtgccaaaacaatcacaaaaagat 33496103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 19890190 - 19890242
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatct 186  Q
    |||||||||  |||| ||||||||||||| |||||| |||||||||| |||||    
19890190 gtaattgttagagcataagacgtgccatagcaatcatgaaaagatcaaaatct 19890242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 16933 - 16882
Alignment:
134 gtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcagaatc 185  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||    
16933 gtaattgttgaagcacaagacgtgccgtaacaatcacgaaaagatcaaaatc 16882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 7475 - 7395
Alignment:
98 gaagaatcaaaaatgaaatatattaccaaaaaacatgtaattgttgaagcacaagacgtgccataacaatcacgaaaagat 178  Q
    |||||| ||||||||||||||||||  |  ||   |||||||||||||||||||||||||||| ||||||||| |||||||    
7475 gaagaaacaaaaatgaaatatattattatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 7395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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