View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_4 (Length: 724)
Name: NF17117_low_4
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 714
Target Start/End: Original strand, 9302364 - 9303073
Alignment:
| Q |
1 |
tcaactagtttgcctcctttgctgccacattaccctcatcgtttcaattataaaaattggtgctgcaaatttctgagatttgtgcagtagattgtctcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9302364 |
tcaactagtttgcctcctttgctgccacattaccctcatcgtttcaattataaaaattggtgctgcaaatttctgagattggtgcagtagattgtctcaa |
9302463 |
T |
|
| Q |
101 |
tatgaaggagctgcaggctaccacatctannnnnnnnatcaacgttggcttccaacttataggtcttaaattattgaaaagtgcaatataattgaagcga |
200 |
Q |
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| T |
9302464 |
tatgaaggagctgcaggctaccacatctattttttt-atccacgttggctt----------ggtcttaaattattgaaaagtgcaatataattgaagcga |
9302552 |
T |
|
| Q |
201 |
catataatttattataaatcagaaaacaaagtgatgagaaaattagtaggcatttaaattaggaacgtgtgtgtgcacgagtggaatttttctgtgtaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9302553 |
catataatttattataaatcagaaaacaaagtgatgagaaaattagtaggcatttaaattaggaacgtgtgtgtgcacgagtggaatttttctgtgtaca |
9302652 |
T |
|
| Q |
301 |
nnnnnnnnnn------attttgacaataaaatttgcttgtgtgctattcatgtttcctttagattttactcattttgatattcatttcattacttgttat |
394 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9302653 |
tttttttattttttttattttgacaataaaatttgtttgtgtgctattcatgtttcctttagattttactcattttgattttcatttcattacttgttat |
9302752 |
T |
|
| Q |
395 |
taaattttcattgtgaatgacttaacatctgaagtattaatgttttaatattgaaccatactcatccttataaaactaaattgtaggatattcattatag |
494 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9302753 |
taaattttcattttgaatgacttaacatctgaagtattaa-gttttaatattgaaccatactcatccttataaaactaaattgtaggatattcattatag |
9302851 |
T |
|
| Q |
495 |
agccatgttagtggtgcagactgcttttgtgtggaagatattcattagaaccaactttactaatctctataatannnnnnnnnngttagtgacta---at |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
9302852 |
agccatgttagtggtgcagactgcttttgtgtggaagatattcattagaaccaactttactaatctctataata-tttttttttgttagtgactaattat |
9302950 |
T |
|
| Q |
592 |
ctctataatattactatgtactataacaacattgcgtaataggtaattagaaagtattaggatacaaacattgcaaaactctaaacgcatctatttttta |
691 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9302951 |
ctctataatattactatgtactataacaacattgcgcaataggtaattagaaagtattaggatacaaacattgcaaaactctaaacgcatctatttttta |
9303050 |
T |
|
| Q |
692 |
tgaaataaattacggatgagtat |
714 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
9303051 |
tgaaataaattacggatgagtat |
9303073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 9332789 - 9332908
Alignment:
| Q |
1 |
tcaactagtttgcctcctttgctgccacattaccctcatcgtttcaattataaaaattggtgctgcaaatt--tctgagatttgtgcagtagattgtctc |
98 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||| ||||||||||||||||||| ||||||| |
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| T |
9332789 |
tcaattagcttgcctcctttgctgccacattaccctcatcatttcaattataaaaattagtggtgcatatttctctgagatttgtgcagtaggttgtctc |
9332888 |
T |
|
| Q |
99 |
aatatgaaggagctgcaggc |
118 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9332889 |
aatatgaaggagctgcaggc |
9332908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 9352502 - 9352619
Alignment:
| Q |
1 |
tcaactagtttgcctcctttgctgccacattaccctcatcgtttcaattataaaaattggtgctgcaaatttctgagatttgtgcagtagattgtctcaa |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
9352502 |
tcaattagcttgcctcctttgctgccacataactctcataatttcaattataaaaactggtgctgcatagttctgagatttgtgcagtaggttgtctcaa |
9352601 |
T |
|
| Q |
101 |
tatgaaggagctgcaggc |
118 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
9352602 |
tatgaaggagctgcaggc |
9352619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 9305997 - 9306097
Alignment:
| Q |
20 |
tgctgccacattaccctcatcgtttcaattataaaaattggtgctgcaaatttct--gagatttgtgcagtagattgtctcaatatgaaggagctgcagg |
117 |
Q |
| |
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||||||||||| || || || ||||||||| |||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
9305997 |
tgctgccacataactcttataatttcaattagaaaaatcagtgctgcaaatttctctgagatctgtgcagtaggttgtctcaatatgaaggagctgcagg |
9306096 |
T |
|
| Q |
118 |
c |
118 |
Q |
| |
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| |
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|
| T |
9306097 |
c |
9306097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 9352713 - 9352763
Alignment:
| Q |
240 |
aaattagtaggcatttaaattaggaacgtgtgtgtgcacgagtggaatttt |
290 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||| |||| |
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| T |
9352713 |
aaattagtaggcatctagattaggaacgtgtgtgtgcacgagtggagtttt |
9352763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 9309459 - 9309402
Alignment:
| Q |
5 |
ctagtttgcctcctttgctgccacattaccctcatcgtttcaattataaaaattggtg |
62 |
Q |
| |
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|||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||| |
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| T |
9309459 |
ctagtttgcctcctctgctgctacattagactcataatttcaattataaaaattggtg |
9309402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9348503 - 9348442
Alignment:
| Q |
1 |
tcaactagtttgcctcctttgctgccacattaccctcatcgtttcaattataaaaattggtg |
62 |
Q |
| |
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|||| ||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||| |
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|
| T |
9348503 |
tcaattagtttgcctcctctgctgctacattagactcataatttcaattataaaaattggtg |
9348442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 9373008 - 9372961
Alignment:
| Q |
20 |
tgctgccacattaccctcatcgtttcaattataaaaattggtgctgca |
67 |
Q |
| |
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||||||||||||||||||||| |||||||||| | |||||||||||| |
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|
| T |
9373008 |
tgctgccacattaccctcatcatttcaattattattattggtgctgca |
9372961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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