View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_40 (Length: 386)
Name: NF17117_low_40
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 427799 - 427440
Alignment:
| Q |
10 |
aagaatatagctgaaataaaaaccgctgacaataatgtactaaatcattatcatatagccaaagttcaacaattgatttggaatccaacaaagtttccca |
109 |
Q |
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| T |
427799 |
aagaatatagctgaaataaaaaccgctgacaataatgtactaaatcattatcatatagccaaagttcaacaattgatttggaatccaacaaagtttccca |
427700 |
T |
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| Q |
110 |
tcaattttgtgattaaataaacaacatggaaagcaatgcaggattgcataatcaattgtgaaattgtatgcttgtgatgtgtgcgaggaattcaattcat |
209 |
Q |
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| T |
427699 |
tcaattttgtgattaaataaacaacatggaaagcaatgcaggattgcataatcaattgtgaaattgtatgcttgtgatgtgtgcgaggaattcaattcat |
427600 |
T |
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| Q |
210 |
tttagggttccacgactcttttattgagggaagaaaacaaatagagtggacgatcgtagaagaaacaggagataaaacgattttctatcattcgttttgt |
309 |
Q |
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| T |
427599 |
tttagggttccacgactcttttattgagggaggaaaacaaatagagtggacgatcttagaagaaaaaggagataaaacgattttctatcattcgttttgt |
427500 |
T |
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| Q |
310 |
tgtgaatgtgttggtgaaagagaaggttgaagatggaatggaaggatagtgggtttgttc |
369 |
Q |
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| T |
427499 |
tgtgaatgtgttggtgaaagagaaggttgaagatggaatggaaggatagtgggtttgttc |
427440 |
T |
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