View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_41 (Length: 386)
Name: NF17117_low_41
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 45668751 - 45669108
Alignment:
| Q |
17 |
atcattctgttgattaacacatttcactgtctcttgaatacagggttcaggactcacatgttgaattctattaaagacttctcaagatcaaacaagaatg |
116 |
Q |
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| T |
45668751 |
atcattcagttgattaacacatttcactgtctcttgaatacagggttcaggactcacatgttgaattctattaaagacttctcaagatcaaacaagaatg |
45668850 |
T |
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| Q |
117 |
gattgtttatcaattcgtgtttcgctcactgccaaactgagaggcaagatacatggttttcagacaattcgccggttattaggaacaaggtgaacattgc |
216 |
Q |
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| T |
45668851 |
gattgtttatcaattcatgtttcgctcactgccaaactgagaggcaagatacatggttttcagacaattcgccggttattaggaacaaggtgaacattgc |
45668950 |
T |
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| Q |
217 |
agtttcacttatgttgttttaactaaaagttaaataaaacaaaatgtacacaataattaaactagaatttcttacaatactctacaattaaactaataat |
316 |
Q |
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| T |
45668951 |
agtttcacttacgttgttttaagtaatagttaaataaaacaaaatgtacacaataattaaactagaatttcttacaatactctacaattaaactaataat |
45669050 |
T |
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| Q |
317 |
atgtacatacattgactaaatataggtaattgctttagctgttggagactggtatttt |
374 |
Q |
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| T |
45669051 |
atgtacatacattgactaaatgtaggtaattgctttagctgttggagactggtatttt |
45669108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 37971541 - 37971420
Alignment:
| Q |
54 |
atacagggttcaggactcacatgttgaattctattaaagacttctcaagatcaaacaagaatggattgtttatcaattcgtgtttcgctcactgccaaac |
153 |
Q |
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| T |
37971541 |
atacaggattcaggaatcacatggtgaatgttgtgagaggcttctcaagatcaagtcaaaatggattgttcataaattcatgctttgctcactgccaatc |
37971442 |
T |
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| Q |
154 |
tgagaggcaagatacatggttt |
175 |
Q |
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| T |
37971441 |
tgagaggcaagacacatggttt |
37971420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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