View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_45 (Length: 370)
Name: NF17117_low_45
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 5190764 - 5190410
Alignment:
| Q |
18 |
aaaactacgtgcagttatgcagtcaaaacaattgcacgcagtttcaactgcaacatgcaaatttgattgcatgcaatctcgctttgaaatgaaagtacaa |
117 |
Q |
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| T |
5190764 |
aaaagtacgtgcagttatgcagtcaaaacaactacacgcagtttcaactgcaacatgcaaatttaattgaatgcaatttcgctttgaaatgaaagtacaa |
5190665 |
T |
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| Q |
118 |
tgtttcaataatttagcttttatgcaaaattgaaaagctttttattttgcnnnnnnntatttttatgtctctaaattctaattttattgtgacatgaatg |
217 |
Q |
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| T |
5190664 |
tgtttcaataatttagcttttatgcaaaattgaaaagcttttaattttgcaaaaaattatttttatgtctctaaattctaattttattgtgacatgaatg |
5190565 |
T |
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| Q |
218 |
aatgtaagggg-------------atgagaattaatataccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatca |
304 |
Q |
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||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5190564 |
aatgtaaaggggatgagattgagaatgagaaataatataccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatca |
5190465 |
T |
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| Q |
305 |
gacggtggagtattagtcccttcaacattcttcattggaatctctactacccttt |
359 |
Q |
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| T |
5190464 |
gacggtggagtattagtcccttcaacattcttcattggaatctctactactcttt |
5190410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 35205472 - 35205543
Alignment:
| Q |
242 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtgga |
313 |
Q |
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| T |
35205472 |
taccttggataaggggagcctttgatgggcttttgaccgtactttctccaagcccatgaatccgacggtgga |
35205543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 12166315 - 12166370
Alignment:
| Q |
242 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaagccca |
297 |
Q |
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| T |
12166315 |
taccttggataaggtgaacctttaataggcttctgaccatattttctccaagccca |
12166370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 36065056 - 36064978
Alignment:
| Q |
241 |
ataccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtggagtatta |
319 |
Q |
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| T |
36065056 |
atacctgggataaggcgaacctttgatgggtttctggccatattttctccatgcccatgaatctgaaggtggtgtatta |
36064978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 39255755 - 39255806
Alignment:
| Q |
242 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaag |
293 |
Q |
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| T |
39255755 |
taccttggatgaggtgaacctttaataggtttctgaccatattttctccaag |
39255806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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