View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_46 (Length: 367)
Name: NF17117_low_46
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 31894407 - 31894055
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtacatttggtataacgaataaaaaaacnnnnnn |
100 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31894407 |
agatattatttcgtgcacaaactataaaaagggaagtgtttgatactataggatactacagaacaagtacatttggtataacgaataaaaaaactttttt |
31894308 |
T |
|
| Q |
101 |
nn-aataaatgaataaaaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaacttt |
199 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31894307 |
tttaataaatgaataaaaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaacttt |
31894208 |
T |
|
| Q |
200 |
ctctagaattcatgccaaaaatatatatctgcatgaatccatagcatgtcaacaaataattaatcataatcattaattaatattagattcaagggtcaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31894207 |
ctctagaattcatgccaaaaatatatatctgcatgaatccatagcatgtcaacaaataattaatcataatcattaattaatattagattcaagggtcaca |
31894108 |
T |
|
| Q |
300 |
atttggattaactctttctacttactctttctaaatcacgagctacataacat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31894107 |
atttggattaactctttctacttactctttctaaatcacgagctacataacat |
31894055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 31684025 - 31684343
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtacatttggtataacgaataaaaaaacnnnnnn |
100 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684025 |
agatattatttcgtgcacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtacatttggtataacgaataaaaaaactttttt |
31684124 |
T |
|
| Q |
101 |
nnaataaatgaataaaaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684125 |
ttaataaatgaataaaaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttc |
31684224 |
T |
|
| Q |
201 |
tctagaattcatgccaaaaatatatatctgcatgaatccatagcatgtcaacaaataattaatcataatcattaattaatattagattcaagggtcacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684225 |
tctagaattcatgccaaaaatatatatctgcatgaatccatagcatgtcaacaaataattaatcataatcattaattaatattagattcaagggtcacaa |
31684324 |
T |
|
| Q |
301 |
tttggattaactctttcta |
319 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
31684325 |
tttggattaactctttcta |
31684343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 31948348 - 31948098
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtacatttggtataacgaataaaaaaacnnnnnn |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948348 |
agatattatttcgtgcacaaactataaaaagggaagtgtttgatactataggatactacagaacaagtacatttggtataacgaataaaaaaactttttt |
31948249 |
T |
|
| Q |
101 |
nn-aataaatgaataaaaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaacttt |
199 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948248 |
tttaataaatgaataaaaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaacttt |
31948149 |
T |
|
| Q |
200 |
ctctagaattcatgccaaaaatatatatctgcatgaatccatagcatgtca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31948148 |
ctctagaattcatgccaaaaatatatatctgcatgaatccatagcatgtca |
31948098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 31898991 - 31898741
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtacatttggtataacgaataaaaaaacnnnnnn |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31898991 |
agatattatttcgtgcacaaactataaaaagggaagtgtttgatactataggatactacagaacaagtacatttggtataacgaataaaaaaactttttt |
31898892 |
T |
|
| Q |
101 |
nn-aataaatgaataaaaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaacttt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31898891 |
tttaataaatgaataaaaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaacttt |
31898792 |
T |
|
| Q |
200 |
ctctagaattcatgccaaaaatatatatctgcatgaatccatagcatgtca |
250 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31898791 |
ctctagaattcatgccaaatatatatatctgcatgaatccatagcatgtca |
31898741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 31914700 - 31914450
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtacatttggtataacgaataaaaaaacnnnnnn |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31914700 |
agatattatttcgtgcacaaactataaaaagggaagtgtttgatactataggatactacagaacaagtacatttggtataacgaataaaaaaactttttt |
31914601 |
T |
|
| Q |
101 |
nn-aataaatgaataaaaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaacttt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31914600 |
tttaataaatgaataaaaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaacttt |
31914501 |
T |
|
| Q |
200 |
ctctagaattcatgccaaaaatatatatctgcatgaatccatagcatgtca |
250 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31914500 |
ctctagaattcatgccaaatatatatatctgcatgaatccatagcatgtca |
31914450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 31897932 - 31898006
Alignment:
| Q |
254 |
aataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactctttctacttactctt |
328 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
31897932 |
aataattaatcacaatcattaattaatattagattcaagggtcatgatttggagtaactctttctacttactctt |
31898006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 31913641 - 31913715
Alignment:
| Q |
254 |
aataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactctttctacttactctt |
328 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
31913641 |
aataattaatcacaatcattaattaatattagattcaagggtcatgatttggagtaactctttctacttactctt |
31913715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 31947289 - 31947363
Alignment:
| Q |
254 |
aataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactctttctacttactctt |
328 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
31947289 |
aataattaatcacaatcattaattaatattagattcaagggtcatgatttggagtaactctttctacttactctt |
31947363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31683937 - 31684006
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtac |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||| |
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|
| T |
31683937 |
agatattacttcgtgtacaaactataaaaaggggagtgtttaatactataagataatgcagaacaagtac |
31684006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31948436 - 31948367
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtac |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||| |
|
|
| T |
31948436 |
agatattacttcgtgtacaaactataaaaaggggagtgtttaatactataagataatgcagaacaagtac |
31948367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31894495 - 31894426
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtac |
70 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| | |||||||||||| |
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|
| T |
31894495 |
agatattacttcgtgtacaaactatgaaaaggggagtgtttaatactataagataatgcagaacaagtac |
31894426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31899079 - 31899010
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtac |
70 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| | |||||||||||| |
|
|
| T |
31899079 |
agatattacttcgtgtacaaactatgaaaaggggagtgtttaatactataagataatgcagaacaagtac |
31899010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31914788 - 31914719
Alignment:
| Q |
1 |
agatattacttcgtgtacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtac |
70 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| | |||||||||||| |
|
|
| T |
31914788 |
agatattacttcgtgtacaaactatgaaaaggggagtgtttaatactataagataatgcagaacaagtac |
31914719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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