View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_47 (Length: 367)
Name: NF17117_low_47
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 34312912 - 34313251
Alignment:
| Q |
13 |
caaaggttgaagacacgtaagagcatattaagacatgtgtcgaagacttttaatttatggttgttatttatggttacttattaattatgtatatatagaa |
112 |
Q |
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| T |
34312912 |
caaaggttgaagacacgtgagagcatattaagacatatgtcgaagacttttaatttatggttgttatttacggttacttattaattatctatatatagaa |
34313011 |
T |
|
| Q |
113 |
gttttgaataggaaaaataactgtcacaaattataatattgtaatctttacgctcaaagtatctaagttacgagtgcatatcttctagtgaaacttttaa |
212 |
Q |
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|||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34313012 |
gttttgaataggaaaaataagggtcacaaattagaatactgtaatctttaagctcaaagtatctaagttacgagtgcatatcttctagtgaaacttttaa |
34313111 |
T |
|
| Q |
213 |
tgaagaaagtgatatgaacattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactc |
312 |
Q |
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| T |
34313112 |
tggagaaagtgatatgaacattagtaccattcaattagttcaacgttga-ggccctgcatggagtgatggaaaataaatgacttagattttattggactc |
34313210 |
T |
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| Q |
313 |
tccaattacaagagagaatcttctctcctaaattacattga |
353 |
Q |
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| T |
34313211 |
ttcaattatagaagagaatctgctccactaagttacattga |
34313251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 34605426 - 34605507
Alignment:
| Q |
230 |
acattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggact |
311 |
Q |
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| T |
34605426 |
acatcaatactattcaattacttcaatattgaagattctgtatggagtagtgaaaaataagtgacttagatctcattggact |
34605507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 31228438 - 31228543
Alignment:
| Q |
230 |
acattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagaga |
329 |
Q |
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|||| ||||||||||||||||||||| |||||||| | |||||||||| | ||||||||||| ||||||| | | ||||||||||||| |||||||||| |
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| T |
31228438 |
acatcaataccattcaattacttcaacgttgagggctccacatggagtagtagaaaataaatggcttagatctcactggactctccaatcacaagagaga |
31228537 |
T |
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| Q |
330 |
atcttc |
335 |
Q |
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|||||| |
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| T |
31228538 |
atcttc |
31228543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 332
Target Start/End: Complemental strand, 23862093 - 23861998
Alignment:
| Q |
236 |
ataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagagaatc |
332 |
Q |
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| T |
23862093 |
ataccattcaattacttcaatattgaaggccc-acatggagtagtagaaaataaatggcttagatctcattggactctccgatcacaggagagaatc |
23861998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 8533884 - 8533778
Alignment:
| Q |
227 |
tgaacattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagag |
326 |
Q |
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||||||||||||||||||||||||||||||||||| || | || |||||| ||||||||||||| ||||||| | |||| |||||| | ||||| ||| |
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| T |
8533884 |
tgaacattaataccattcaattacttcaatgttgaaggctccgcacggagtagtggaaaataaatggcttagatctcattgaactctcaagttacatgag |
8533785 |
T |
|
| Q |
327 |
agaatct |
333 |
Q |
| |
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||||||| |
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|
| T |
8533784 |
agaatct |
8533778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 34639669 - 34639606
Alignment:
| Q |
235 |
aataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttag |
298 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||||||||||||| || |||||||||| ||||| |
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|
| T |
34639669 |
aataccattcaattacatcaatgttgtgggccctacatggagtagtgaaaaataaatggcttag |
34639606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 341
Target Start/End: Original strand, 16443009 - 16443120
Alignment:
| Q |
230 |
acattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagaga |
329 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||| || ||||| |||| ||||||||||||| |||||| | | |||||||||| | ||| |||||| |
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| T |
16443009 |
acatcaatatcattcaattgcttcaatgttgaggatctcacatgaagtagtggaaaataaatggtttagatatcaccggactctccagtcacatgagaga |
16443108 |
T |
|
| Q |
330 |
atcttctctcct |
341 |
Q |
| |
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|| | ||||||| |
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| T |
16443109 |
atttgctctcct |
16443120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 7256763 - 7256842
Alignment:
| Q |
236 |
ataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctcc |
315 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||| | | |||||||||| |
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| T |
7256763 |
ataccattcaattacttcaatgttgagggcatcccatgaagtagtggaaaataaatggcttagatctcactggactctcc |
7256842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 17177506 - 17177462
Alignment:
| Q |
287 |
taaatgacttagatttaattggactctccaattacaagagagaat |
331 |
Q |
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|||||||||||||||| ||||||||||||| | ||| |||||||| |
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| T |
17177506 |
taaatgacttagatttcattggactctccagtcacaggagagaat |
17177462 |
T |
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