View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_48 (Length: 364)
Name: NF17117_low_48
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 10032751 - 10033076
Alignment:
| Q |
18 |
actaaaacacaatgataagtctcatcaaccatatcttgcggtatttgtttattccaagtgctgttcatcttttattatagctttatagccactcacaaaa |
117 |
Q |
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| T |
10032751 |
actaaaacacaatgataagtctcatcaaccatatcttgcggtatttgtttattccaagtgctgttcatcttttattatagctttatagccactcacaaaa |
10032850 |
T |
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| Q |
118 |
gttaattaattcgttggatt--gactacaaaagaaaacgatgcctttcttatctagaaaaatccacatataggccccggatataaaggagaacatatgtt |
215 |
Q |
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| T |
10032851 |
gttaattaattcgttggattttgactacaaaagaaaacgatgcctttcttatctagaaaaatccacatataggccccggatataaaggagaacatatgtt |
10032950 |
T |
|
| Q |
216 |
aaagtaaattattgatgactttaatgttagctttataggattctaattcccttactttagggatataattagaaacaccacattaatagctagctacatt |
315 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10032951 |
aaagtaaattattgatgactttaatgttaactttataggattctaattcccttactttagggatataattagaaacaccacattaa----tagctacatt |
10033046 |
T |
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| Q |
316 |
tgatata----tttttttagcatttcttct |
341 |
Q |
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||||||| ||||||||||||||||||| |
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| T |
10033047 |
tgatatagttttttttttagcatttcttct |
10033076 |
T |
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