View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_49 (Length: 357)
Name: NF17117_low_49
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 32532456 - 32532131
Alignment:
| Q |
14 |
gcaaaggagacttggaaatcaacatcaaataggtggagtggaaaaaacacatacaacaacaatagtttaggagtgacttgtgagacaaatttgagtcaaa |
113 |
Q |
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| T |
32532456 |
gcaaaggagacttggaaatcaacatcaaataggtggagtggaaaaaacacatacaacaacaatagtttaggggtgagttgtgagacaaatttgagtcaaa |
32532357 |
T |
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| Q |
114 |
tggaagggtttaacattaacatgtatggaaatgaagagagttgtggaatgatggtgagaaagagagttatggttgtggttgatggtacttcacattctaa |
213 |
Q |
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| T |
32532356 |
tggaagggtttaacattaacatgtatggaaatgaagagagttgtggaatgatggtgagaaagagagttatggttgtggttgatggtacttcacattctaa |
32532257 |
T |
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| Q |
214 |
gcatgcaatgatttgggcacttactcatgttgttaataagggtgatttgttgactttgctttacattgtttctcctcaaagtgcttctgagtcttattct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32532256 |
gcatgcaatgatttgggcacttactcatgttgttaataagggtgatttgttgactttgctttacattgtttctcctcaaagtgcttctgactcttattct |
32532157 |
T |
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| Q |
314 |
tccacttatcttgttaaccatcttgg |
339 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32532156 |
tccacttatcttgttaaccatcttgg |
32532131 |
T |
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