View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17117_low_50 (Length: 353)
Name: NF17117_low_50
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_50 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0050 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 69971 - 69627
Alignment:
| Q |
18 |
aatcactcatctaatatcaatcaaatgctaatataacaaactagagtttcataattttgatctcaactacaaatgacatcaatgcaggctattgattttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69971 |
aatcactcatctaatatcaatcaaatgctaatataacaaattagagtttcataattttgatctcaactacaaatgacatcaatgcaggctattgattttc |
69872 |
T |
|
| Q |
118 |
gattcgttctttttgctttctactgtttgtcaaattttctcattaaagggttgtttagattaacttatttaagattatctacggacatagccacttgaga |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
69871 |
gattcgttctttttgctttctactatttgtcaaattttctcattaaagggttgtttagattaacttatttaagattatccacggacatagccacttgaga |
69772 |
T |
|
| Q |
218 |
aattatttgagagaacttatgaaaacaactaccgcttgtacataagttgtt------taaattccataaactatctaggatagcttc---aacagggttt |
308 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
69771 |
aactatttgagagaacttatgaaaacaactaccgcttgtacataagttgttttcaactaaattccataaactatctaggatagcttcactaacagggttt |
69672 |
T |
|
| Q |
309 |
taaaaaacgatccgttaccgatgttaagagtctcacatcggatag |
353 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
69671 |
taaaaaacggtccgttaccgaggttaagagtcccacaacggatag |
69627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 50211887 - 50211808
Alignment:
| Q |
168 |
ttgtttagattaacttatttaagattatctacggacatagccacttgagaaattatttgagagaacttatgaaaacaact |
247 |
Q |
| |
|
|||||| ||||||||||||| || |||||||| ||||| |||||| | | | ||||||||||||||||||||||||| |
|
|
| T |
50211887 |
ttgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaact |
50211808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 27857496 - 27857431
Alignment:
| Q |
182 |
ttatttaagattatctacggacatagccacttgagaaattatttgagagaacttatgaaaacaact |
247 |
Q |
| |
|
|||||| || |||||||| ||||||| |||||| |||| | |||| |||| ||||||||||||||| |
|
|
| T |
27857496 |
ttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaact |
27857431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 4350842 - 4350766
Alignment:
| Q |
168 |
ttgtttagattaacttatttaagattatctacggacatagccacttgagaaattatttgagagaacttatgaaaaca |
244 |
Q |
| |
|
|||||| |||| ||||||| || || ||||| |||||| ||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
4350842 |
ttgtttggattggcttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttatgaaaaca |
4350766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University