View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_low_54 (Length: 317)

Name: NF17117_low_54
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_low_54
NF17117_low_54
[»] chr4 (2 HSPs)
chr4 (1-297)||(32243168-32243464)
chr4 (2-279)||(32248250-32248527)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 32243168 - 32243464
Alignment:
Q  1 tcttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagggcaccgacctatg 100  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  32243168 tcttcttgggagcaaccagtataacttcttgaagcatgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagggcaccgacctatg 32243267  T
Q  101 tacacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtgtcccttgcccttt 200  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32243268 tacaccacaatcaacggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctattggtgaataacaatgtgtcccttgcccttt 32243367  T
Q  201 ggggccatgttcacagatacgagagattttgtccactgaataactacacttgtggaaatggtgtgggccagagagcaggagacagaggatataccgt 297  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  32243368 ggggccatgttcatagatacgagagattttgtccactgaataactacacttgtggaaatggtgtgggccagagagcaagagacaaaggatataccgt 32243464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 279
Target Start/End: Original strand, 32248250 - 32248527
Alignment:
Q  2 cttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagggcaccgacctatgt 101  Q
    |||| ||||||||| || ||||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  32248250 cttcctgggagcaatcagtataacttcttaaagcgtgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagggcaccgacccatgt 32248349  T
Q  102 acacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtgtcccttgccctttg 201  Q
    |||||||||  |||| |   | ||||| |  |||||||| | ||||| | |||||| |||||||||| |||||||||||| ||||  |||||||||||||    
T  32248350 acacaacaagcaatgaatttagggatgctgcgttaagaggaaagatggttgagcacctggaacctctattggtgaataaccatgtaacccttgccctttg 32248449  T
Q  202 gggccatgttcacagatacgagagattttgtccactgaataactacacttgtggaaatggtgtgggccagagagcagg 279  Q
    ||| |||||||| || |||||||||||||||||||| || ||||  |||||||||||||||||||| | |||||||||    
T  32248450 gggtcatgttcataggtacgagagattttgtccactaaacaactttacttgtggaaatggtgtgggtcggagagcagg 32248527  T

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