View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_low_56 (Length: 308)

Name: NF17117_low_56
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_low_56
NF17117_low_56
[»] chr6 (23 HSPs)
chr6 (55-276)||(8446912-8447134)
chr6 (55-276)||(8455716-8455938)
chr6 (88-174)||(21969265-21969351)
chr6 (61-175)||(26330306-26330420)
chr6 (102-187)||(15965625-15965710)
chr6 (75-176)||(21969132-21969233)
chr6 (237-291)||(8447156-8447211)
chr6 (237-291)||(8455960-8456015)
chr6 (90-187)||(2182361-2182456)
chr6 (61-143)||(9530522-9530604)
chr6 (66-140)||(22017775-22017849)
chr6 (88-176)||(8592232-8592319)
chr6 (88-163)||(3960854-3960929)
chr6 (78-133)||(17333287-17333341)
chr6 (236-275)||(34583239-34583278)
chr6 (61-143)||(21394229-21394311)
chr6 (66-184)||(19121832-19121952)
chr6 (54-171)||(21394484-21394600)
chr6 (88-136)||(6782912-6782960)
chr6 (119-176)||(3890022-3890079)
chr6 (67-171)||(5656572-5656674)
chr6 (66-171)||(19121979-19122084)
chr6 (119-171)||(32942390-32942442)
[»] chr4 (26 HSPs)
chr4 (67-272)||(44137370-44137573)
chr4 (66-246)||(21782116-21782295)
chr4 (56-187)||(55397366-55397497)
chr4 (104-276)||(55264415-55264587)
chr4 (67-172)||(55264625-55264730)
chr4 (88-176)||(13119370-13119458)
chr4 (91-187)||(54091004-54091100)
chr4 (66-176)||(13119171-13119281)
chr4 (91-172)||(11383025-11383105)
chr4 (66-133)||(13302117-13302184)
chr4 (88-187)||(33614362-33614461)
chr4 (88-143)||(39051105-39051160)
chr4 (67-129)||(11382898-11382960)
chr4 (117-171)||(39051322-39051376)
chr4 (74-171)||(55397624-55397721)
chr4 (90-137)||(45921893-45921940)
chr4 (231-278)||(55264623-55264670)
chr4 (103-169)||(40942598-40942664)
chr4 (231-276)||(13119232-13119277)
chr4 (231-276)||(44137430-44137475)
chr4 (66-143)||(51103653-51103730)
chr4 (64-169)||(54090873-54090978)
chr4 (127-176)||(55264542-55264591)
chr4 (231-271)||(22886484-22886524)
chr4 (231-271)||(22938148-22938188)
chr4 (231-275)||(49448250-49448294)
[»] chr3 (34 HSPs)
chr3 (71-276)||(55446931-55447137)
chr3 (66-275)||(39840782-39840991)
chr3 (72-187)||(39840645-39840759)
chr3 (69-176)||(48338294-48338401)
chr3 (88-271)||(33429014-33429196)
chr3 (66-175)||(20123990-20124099)
chr3 (88-172)||(55447175-55447259)
chr3 (88-175)||(42045773-42045860)
chr3 (75-171)||(20124238-20124333)
chr3 (88-155)||(51862681-51862747)
chr3 (88-177)||(27812291-27812380)
chr3 (66-142)||(3910211-3910287)
chr3 (66-178)||(45965791-45965903)
chr3 (78-133)||(51862427-51862482)
chr3 (61-171)||(29504744-29504854)
chr3 (102-187)||(41709269-41709352)
chr3 (98-263)||(1163398-1163561)
chr3 (119-172)||(33428919-33428972)
chr3 (88-181)||(40472832-40472925)
chr3 (90-143)||(48338574-48338627)
chr3 (236-275)||(11413205-11413244)
chr3 (201-263)||(51862570-51862632)
chr3 (82-163)||(49782200-49782281)
chr3 (88-152)||(27812207-27812271)
chr3 (66-130)||(46164120-46164184)
chr3 (231-274)||(42045897-42045940)
chr3 (215-274)||(48338439-48338498)
chr3 (245-276)||(48338539-48338570)
chr3 (88-137)||(31300393-31300442)
chr3 (121-170)||(42045897-42045946)
chr3 (231-276)||(48338352-48338397)
chr3 (88-140)||(16298194-16298246)
chr3 (102-142)||(47337322-47337362)
chr3 (90-138)||(49547592-49547640)
[»] chr7 (22 HSPs)
chr7 (66-232)||(42709897-42710061)
chr7 (66-177)||(41008910-41009021)
chr7 (66-275)||(42710041-42710239)
chr7 (78-153)||(12427825-12427900)
chr7 (119-187)||(33384104-33384172)
chr7 (66-167)||(30935187-30935289)
chr7 (90-170)||(12427959-12428039)
chr7 (102-170)||(26752010-26752078)
chr7 (78-133)||(16953101-16953156)
chr7 (85-155)||(30935349-30935419)
chr7 (117-171)||(32296420-32296474)
chr7 (66-131)||(24451952-24452017)
chr7 (78-187)||(10525021-10525124)
chr7 (67-133)||(16810429-16810495)
chr7 (104-170)||(21248991-21249057)
chr7 (88-133)||(16830518-16830563)
chr7 (66-143)||(21297716-21297793)
chr7 (231-272)||(40089030-40089071)
chr7 (93-142)||(41008801-41008850)
chr7 (66-130)||(16808034-16808098)
chr7 (231-271)||(33189946-33189986)
chr7 (104-143)||(43669487-43669524)
[»] chr1 (26 HSPs)
chr1 (74-275)||(40649902-40650101)
chr1 (90-276)||(15395197-15395384)
chr1 (63-176)||(10377535-10377648)
chr1 (66-187)||(40649757-40649878)
chr1 (66-142)||(1818406-1818482)
chr1 (66-163)||(38783872-38783969)
chr1 (89-171)||(27293283-27293365)
chr1 (66-164)||(34835719-34835817)
chr1 (66-175)||(46410624-46410734)
chr1 (215-276)||(845112-845173)
chr1 (66-133)||(6061592-6061659)
chr1 (66-143)||(28504691-28504768)
chr1 (66-143)||(46410845-46410922)
chr1 (57-171)||(38576545-38576659)
chr1 (66-171)||(7790405-7790509)
chr1 (220-276)||(23399652-23399706)
chr1 (123-175)||(50147223-50147275)
chr1 (97-171)||(15395423-15395497)
chr1 (74-144)||(31063493-31063563)
chr1 (106-187)||(7790300-7790381)
chr1 (88-169)||(10595497-10595578)
chr1 (88-153)||(31063254-31063317)
chr1 (230-291)||(34835628-34835689)
chr1 (114-170)||(845016-845072)
chr1 (88-140)||(8792969-8793021)
chr1 (90-170)||(50147105-50147185)
[»] chr5 (29 HSPs)
chr5 (66-169)||(8840016-8840119)
chr5 (97-175)||(8285228-8285306)
chr5 (66-187)||(12640190-12640310)
chr5 (66-171)||(9637749-9637851)
chr5 (88-276)||(31050969-31051156)
chr5 (78-154)||(20399017-20399093)
chr5 (88-175)||(31046130-31046218)
chr5 (88-185)||(31066061-31066159)
chr5 (58-143)||(1862390-1862475)
chr5 (88-175)||(31051191-31051279)
chr5 (72-176)||(8285012-8285116)
chr5 (66-167)||(11275786-11275887)
chr5 (108-276)||(31065868-31066036)
chr5 (63-171)||(36184730-36184838)
chr5 (88-275)||(27354416-27354600)
chr5 (90-173)||(5971883-5971966)
chr5 (88-187)||(39643020-39643119)
chr5 (118-187)||(1189371-1189440)
chr5 (98-143)||(27354301-27354346)
chr5 (215-276)||(36184644-36184705)
chr5 (215-276)||(39643146-39643207)
chr5 (224-276)||(8285150-8285202)
chr5 (66-173)||(11243235-11243339)
chr5 (215-276)||(31046034-31046095)
chr5 (102-171)||(39643246-39643315)
chr5 (127-171)||(1862284-1862328)
chr5 (123-171)||(4902222-4902270)
chr5 (119-171)||(9900231-9900283)
chr5 (92-176)||(36184522-36184606)
[»] chr2 (20 HSPs)
chr2 (57-187)||(39760359-39760489)
chr2 (66-171)||(22191507-22191613)
chr2 (90-276)||(32502936-32503121)
chr2 (94-272)||(39760151-39760327)
chr2 (66-186)||(32013958-32014077)
chr2 (53-171)||(32502779-32502897)
chr2 (221-275)||(33939948-33940002)
chr2 (90-176)||(33940026-33940112)
chr2 (66-140)||(44327883-44327957)
chr2 (104-175)||(17658794-17658865)
chr2 (73-140)||(33939812-33939879)
chr2 (129-175)||(3116829-3116875)
chr2 (215-276)||(8033575-8033636)
chr2 (66-143)||(17184756-17184833)
chr2 (94-187)||(22191390-22191483)
chr2 (88-137)||(3117048-3117097)
chr2 (231-276)||(17658817-17658862)
chr2 (127-168)||(17658920-17658961)
chr2 (239-276)||(22191431-22191468)
chr2 (66-155)||(26407678-26407767)
[»] scaffold0154 (3 HSPs)
scaffold0154 (74-275)||(5974-6173)
scaffold0154 (66-232)||(6153-6319)
scaffold0154 (231-276)||(6213-6258)
[»] chr8 (18 HSPs)
chr8 (86-276)||(32029405-32029594)
chr8 (95-176)||(21136596-21136677)
chr8 (75-175)||(41424397-41424497)
chr8 (66-176)||(32029628-32029738)
chr8 (90-176)||(10028655-10028741)
chr8 (88-143)||(5840355-5840410)
chr8 (73-176)||(10028730-10028833)
chr8 (74-172)||(12220823-12220921)
chr8 (90-155)||(21136728-21136793)
chr8 (127-175)||(41424551-41424599)
chr8 (88-163)||(23961645-23961720)
chr8 (104-155)||(38225709-38225760)
chr8 (66-167)||(5074516-5074617)
chr8 (94-143)||(23768767-23768816)
chr8 (215-272)||(29490500-29490557)
chr8 (106-163)||(29490608-29490665)
chr8 (236-276)||(23768882-23768922)
chr8 (239-275)||(29490421-29490457)
[»] scaffold0528 (2 HSPs)
scaffold0528 (88-276)||(1785-1972)
scaffold0528 (88-175)||(1662-1750)
[»] scaffold0340 (2 HSPs)
scaffold0340 (78-175)||(10994-11091)
scaffold0340 (88-172)||(10875-10959)
[»] scaffold0022 (2 HSPs)
scaffold0022 (66-170)||(62669-62773)
scaffold0022 (78-143)||(122563-122628)
[»] scaffold0198 (2 HSPs)
scaffold0198 (57-134)||(11907-11984)
scaffold0198 (88-134)||(11542-11588)
[»] scaffold0137 (1 HSPs)
scaffold0137 (66-155)||(17080-17169)
[»] scaffold0050 (1 HSPs)
scaffold0050 (66-171)||(81946-82051)
[»] scaffold0360 (1 HSPs)
scaffold0360 (88-143)||(4795-4850)
[»] scaffold0024 (1 HSPs)
scaffold0024 (78-155)||(70839-70916)
[»] scaffold0066 (1 HSPs)
scaffold0066 (123-187)||(12091-12155)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 55 - 276
Target Start/End: Original strand, 8446912 - 8447134
Alignment:
Q  55 actttttcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgt 154  Q
    |||||||||| ||||||||||||||| | ||| ||||| ||||||||| ||||||||||| |||| ||||||||||||| ||||||||| || |||||||    
T  8446912 actttttcgagtaaaccatcaatttgattcctttctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtcaatgtctttgt 8447011  T
Q  155 cgaaagtttttcaattaagtccttcatcatgt-gnnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtc 253  Q
      |||||||||||||||||||||||||||||| |        |||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||    
T  8447012 taaaagtttttcaattaagtccttcatcatgtggaaaaaaaacatagaaacatgagtctaattgataaatttttgacaataattcaaaatagtacttgtc 8447111  T
Q  254 tttgtcaaaagtttctcaattaa 276  Q
    |||||||||||||||||||||||    
T  8447112 tttgtcaaaagtttctcaattaa 8447134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 55 - 276
Target Start/End: Original strand, 8455716 - 8455938
Alignment:
Q  55 actttttcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgt 154  Q
    |||||||||| ||||||||||||||| | ||| ||||| ||||||||| ||||||||||| |||| ||||||||||||| ||||||||| || |||||||    
T  8455716 actttttcgagtaaaccatcaatttgattcctttctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtcaatgtctttgt 8455815  T
Q  155 cgaaagtttttcaattaagtccttcatcatgt-gnnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtc 253  Q
      |||||||||||||||||||||||||||||| |        |||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||    
T  8455816 taaaagtttttcaattaagtccttcatcatgtggaaaaaaaacatagaaacatgagtctaattgataaatttttgacaataattcaaaatagtacttgtc 8455915  T
Q  254 tttgtcaaaagtttctcaattaa 276  Q
    |||||||||||||||||||||||    
T  8455916 tttgtcaaaagtttctcaattaa 8455938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 21969351 - 21969265
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagt 174  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||    ||| |||||| ||||| | ||||||||||    
T  21969351 tctttgtaagtgaatctcaaattagtctctgactcaattaatattttaaaatagcttttatttttgtcaaaagtctctcaattaagt 21969265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 26330420 - 26330306
Alignment:
Q  61 tcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaag 160  Q
    |||| ||||||||||| || |||  | | ||||||||||||| |||||||||||  ||||||||||||||||||||||||||   | |||||||| ||      
T  26330420 tcgagtaaaccatcaaattagtctatatttttgtaagtgattatcaaattagtcattgactctattaatattttaaaatagttgttgtctttgtcaaaga 26330321  T
Q  161 tttttcaattaagtc 175  Q
    ||| |||||||||||    
T  26330320 tttatcaattaagtc 26330306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 15965625 - 15965710
Alignment:
Q  102 tctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||| ||||||||| |  | ||||||||||||||| ||||| ||||| ||||| ||||||||||||||| ||||||| |||||||    
T  15965625 tctcatattagtccccgtttatattaatattttaaactagtctatatccttgtcaaaagtttttcaattacgtccttcgtcatgtg 15965710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 21969132 - 21969233
Alignment:
Q  75 aatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagt 174  Q
    ||||| ||| || ||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||  |  | ||||| || ||||||| ||||||||||    
T  21969132 aatttagtcactgtctttataagtgattttcaaaatagtcactgactctattaatattttaaaataaactctgtctttatcaaaagtttctcaattaagt 21969231  T
Q  175 cc 176  Q
    ||    
T  21969232 cc 21969233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 8447211 - 8447156
Alignment:
Q  237 tcaaaatagtatttgtctttgtcaaaa-gtttctcaattaatttctatatcatgtg 291  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  8447211 tcaaaatagtctttgtctttgtcaaaaagtttctcaattaatttctatgtcatgtg 8447156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 8456015 - 8455960
Alignment:
Q  237 tcaaaatagtatttgtctttgtcaaaa-gtttctcaattaatttctatatcatgtg 291  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  8456015 tcaaaatagtctttgtctttgtcaaaaagtttctcaattaatttctatgtcatgtg 8455960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 2182456 - 2182361
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||||| ||||||||||||||||| | ||||||  ||||||||||||||||| ||||| |||||  |||  |||||||| ||||| ||| |||||||    
T  2182456 tttgtaattgattctcaaattagtctcagactct--taatattttaaaatagttcatatttttgttaaaaaattttcaatgaagtcattcgtcatgtg 2182361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 9530522 - 9530604
Alignment:
Q  61 tcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    |||| |||||||| || |||||| || ||||||||||| ||||||||||||||| || ||| ||||||||||| ||| |||||    
T  9530522 tcgaataaaccattaaattggtctctgtctttgtaagtcattctcaaattagtctctaactttattaatatttcaaactagtc 9530604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 22017775 - 22017849
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaata 140  Q
    ||||||||||||||||||  | ||||||||||||||| |||||||||| | | | | ||||||||||||||||||    
T  22017775 taaaccatcaatttggtctttatctttgtaagtgattatcaaattagttcataattttattaatattttaaaata 22017849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 8592319 - 8592232
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcc 176  Q
    ||||||| ||| | ||| ||||||||  ||||||| ||||| ||||||||||| ||  |||||||||| ||||||||||||||||||||    
T  8592319 tctttgtgagtcactcttaaattagtttctgactcaattaacattttaaaataatct-tatctttgtcaaaagtttttcaattaagtcc 8592232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 3960929 - 3960854
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttt 163  Q
    ||||||||||| ||| ||||| |||||  ||||||||||||||||||||| |||||| | | |||||| |||||||    
T  3960929 tctttgtaagttattatcaaactagtctatgactctattaatattttaaattagtccttgtgtttgtcaaaagttt 3960854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 17333287 - 17333341
Alignment:
Q  78 ttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattt 133  Q
    ||||||||| ||||||||||  || |||||||||||||||||||||||||||||||    
T  17333287 ttggtccctatctttgtaaga-atactcaaattagtccctgactctattaatattt 17333341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 34583239 - 34583278
Alignment:
Q  236 ttcaaaatagtatttgtctttgtcaaaagtttctcaatta 275  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  34583239 ttcaaaatagtatttgtttttgtcaaaagtttctcaatta 34583278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 21394229 - 21394311
Alignment:
Q  61 tcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    |||| ||||||| ||| || ||| || ||||||||||  | |||||||||||||  | |||||||||||||||||||||||||    
T  21394229 tcgagtaaaccaccaaattagtcactgtctttgtaagccactctcaaattagtcattaactctattaatattttaaaatagtc 21394311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 19121832 - 19121952
Alignment:
Q  66 taaaccatcaatttggtccctct--ctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttt 163  Q
    ||||||| ||| |||||| ||||  |||||||||  | ||||||| ||||| || ||||||||||||||||||| ||||   |||||||||| |||| ||    
T  19121832 taaaccaccaaattggtctctctgtctttgtaagccactctcaaactagtcgctaactctattaatattttaaactagtttctatctttgtcaaaagctt 19121931  T
Q  164 ttcaattaagtccttcatcat 184  Q
     | ||||| |||| |||||||    
T  19121932 ctaaattaggtccctcatcat 19121952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 21394600 - 21394484
Alignment:
Q  54 aactttttcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttg 153  Q
    |||||||| || |||||||  |||||||||  | ||||||||||| | ||||||||||||||| |||| ||||||||||  ||||||  |  ||||||||    
T  21394600 aacttttttgagtaaaccactaatttggtctgtgtctttgtaagtcactctcaaattagtccc-gactttattaatattgaaaaataacctctatctttg 21394502  T
Q  154 tcgaaagtttttcaatta 171  Q
    || | ||||| |||||||    
T  21394501 tcaatagtttctcaatta 21394484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 6782960 - 6782912
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaa 136  Q
    ||||| ||||||||| |||||||||||||| ||| ||||||||||||||    
T  6782960 tctttataagtgattatcaaattagtccctaactttattaatattttaa 6782912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 3890079 - 3890022
Alignment:
Q  119 actctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcc 176  Q
    |||||||||||||| |||| |||| ||| |||||||| ||||||| ||||||| ||||    
T  3890079 actctattaatattctaaactagttcatgtctttgtcaaaagtttctcaattaggtcc 3890022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 5656674 - 5656572
Alignment:
Q  67 aaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttc 166  Q
    |||||| ||| ||||||||| ||||||||  | ||| ||||  ||||||| |||| ||||||||||||||| |||||  | |||||||  ||||||| ||    
T  5656674 aaaccaccaaattggtccctatctttgtagatcattttcaa--tagtccccgactatattaatattttaaactagtctctgtctttgttaaaagtttctc 5656577  T
Q  167 aatta 171  Q
    |||||    
T  5656576 aatta 5656572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 19122084 - 19121979
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||||||| || ||| |  ||||||||||| | | |||||||||||  ||||||||||||||||| ||| ||||  || |||||||   |||||| |    
T  19122084 taaaccatcaaattagtcaccatctttgtaagtcactttcaaattagtctatgactctattaatatttcaaactagtttatgtctttgttagaagtttct 19121985  T
Q  166 caatta 171  Q
    ||||||    
T  19121984 caatta 19121979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 32942442 - 32942390
Alignment:
Q  119 actctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    |||||||||||||||||| || ||| || ||||| |||||||||| |||||||    
T  32942442 actctattaatattttaatatggtctatgtctttatcgaaagtttctcaatta 32942390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 272
Target Start/End: Original strand, 44137370 - 44137573
Alignment:
Q  67 aaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttc 166  Q
    |||||| ||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||   | |||||||| ||| ||| ||    
T  44137370 aaaccaccaatttggtccttatttttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtatctgtctttgtcaaaaatttatc 44137469  T
Q  167 aattaagtccttcatcatgtgnnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtt 266  Q
    |||||||||  ||||| ||||        ||||||||||| |||||  |||| ||||||||||||||| ||||||||||| | || ||||||||||||||    
T  44137470 aattaagtctctcatcgtgtg--aaaaaacatagaaacataagtctaattgagaaacttttgacaatatttcaaaatagtttatgcctttgtcaaaagtt 44137567  T
Q  267 tctcaa 272  Q
    ||||||    
T  44137568 tctcaa 44137573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 246
Target Start/End: Original strand, 21782116 - 21782295
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||||||||||||||| | |||||||||||||| |  |||||||||   |||| ||||||||||| |||||||||  | ||||| || |||||||||    
T  21782116 taaaccatcaatttggtccatttctttgtaagtgatacaaaaattagtctacgactatattaatatttcaaaatagtcactctctttatcaaaagttttt 21782215  T
Q  166 caattaagtccttcatcatgtgnnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagt 246  Q
    ||||||||||| ||||||||||        ||| ||||||||||| |  |||| ||||||||||||||| |||||||||||    
T  21782216 caattaagtccctcatcatgtg-aaagaaacatggaaacatgagtttaattgagaaacttttgacaatatttcaaaatagt 21782295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 55397366 - 55397497
Alignment:
Q  56 ctttttcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtc 155  Q
    |||| |||||||||||||||||||||||  ||||||| ||| | |||||||||||| ||   |||| ||||||||||||||||||||   |||||||||     
T  55397366 ctttctcgactaaaccatcaatttggtcattctctttctaaatcattctcaaattaatcttcgactttattaatattttaaaatagtttttatctttgtt 55397465  T
Q  156 gaaagtttttcaattaagtccttcatcatgtg 187  Q
     ||||||||| |||| | ||| ||||||||||    
T  55397466 aaaagttttttaatttaatccctcatcatgtg 55397497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 276
Target Start/End: Original strand, 55264415 - 55264587
Alignment:
Q  104 tcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtgnnnnnnnncatagaaa 203  Q
    |||| |||||| |||||||||||||||||| |||||||||  | |||||||| |||||||||||||||| ||  | ||||||||           ||| |    
T  55264415 tcaatttagtcactgactctattaatatttcaaaatagtcattgtctttgtcaaaagtttttcaattaaatctcttatcatgtgacaaaaaaagaagaga 55264514  T
Q  204 catgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
     |  |||||  |||| ||||||||||||||| |||||||||||   |||||||||||||||||||||||||||    
T  55264515 aagaagtctaattgagaaacttttgacaatatttcaaaatagtcaatgtctttgtcaaaagtttctcaattaa 55264587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 55264730 - 55264625
Alignment:
Q  67 aaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttc 166  Q
    |||||| ||||||||||| | |||||  |||||| ||||||||||||| |||| ||||||||||||| |||| ||||  | |||||||| ||||||| ||    
T  55264730 aaaccaccaatttggtccatgtctttacaagtgactctcaaattagtctctgaatctattaatatttcaaaagagtctgtgtctttgtcaaaagtttctc 55264631  T
Q  167 aattaa 172  Q
    ||||||    
T  55264630 aattaa 55264625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 13119458 - 13119370
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcc 176  Q
    ||||||||| ||||| ||||||||||   ||||||||||||||||| |||||||||| | |||||||  ||||||| ||||||||||||    
T  13119458 tctttgtaaatgattatcaaattagtttatgactctattaatatttcaaaatagtccctgtctttgttaaaagtttctcaattaagtcc 13119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 54091100 - 54091004
Alignment:
Q  91 ttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    |||||||| |||||||||||||||  |||||| |||||||||||||| ||||  || |||||||| ||||||| ||||||| |||| || |||||||    
T  54091100 ttgtaagtcattctcaaattagtcattgactcaattaatattttaaactagtatatgtctttgtccaaagtttctcaattaggtccctcgtcatgtg 54091004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 13119171 - 13119281
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||||||| || ||| || ||||||||||||| |||||||||||| | | || |  ||||||||| |||||||||  | |||||||| ||||||| |    
T  13119171 taaaccatcaaattagtctctgtctttgtaagtgaatctcaaattagttcttcacgcatttaatatttcaaaatagtcgctgtctttgtcaaaagtttct 13119270  T
Q  166 caattaagtcc 176  Q
    |||||||||||    
T  13119271 caattaagtcc 13119281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 11383105 - 11383025
Alignment:
Q  91 ttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaa 172  Q
    |||||||||||| |||||||||||  ||||| || ||||||||||||||||| ||| |||||||| ||||||| | ||||||    
T  11383105 ttgtaagtgattatcaaattagtctatgactttagtaatattttaaaatagt-catgtctttgtcaaaagtttcttaattaa 11383025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 13302117 - 13302184
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattt 133  Q
    ||||||| ||| ||| ||||| ||||||||||| |||||||||||||||||||  |||||||| ||||    
T  13302117 taaaccaccaaattgatccctgtctttgtaagtcattctcaaattagtccctgcttctattaacattt 13302184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 33614461 - 33614362
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    |||||||| | || |||||||||||||| ||||| ||||||||||| ||| |||||  | |||||| | ||||||| ||||||  |||| ||||||||||    
T  33614461 tctttgtaggagactctcaaattagtccatgactttattaatatttcaaactagtctctgtctttgacaaaagtttctcaatttggtccctcatcatgtg 33614362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 39051105 - 39051160
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||||||||| | |||||||||||||  ||| |||||||||||||||||||||||    
T  39051105 tctttgtaagtcactctcaaattagtcattgattctattaatattttaaaatagtc 39051160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 11382898 - 11382960
Alignment:
Q  67 aaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaat 129  Q
    |||||||||| || |||| | |||||| ||||||||||||||||||||  |||||||||||||    
T  11382898 aaaccatcaaattagtccttgtctttgcaagtgattctcaaattagtcattgactctattaat 11382960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 39051376 - 39051322
Alignment:
Q  117 tgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    |||||||||||||||||||||||||||  | |||||||| ||||||| |||||||    
T  39051376 tgactctattaatattttaaaatagtcactgtctttgtcaaaagtttctcaatta 39051322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 55397721 - 55397624
Alignment:
Q  74 caatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    ||||||||||  | ||||||||||| | | | |||||||||||  ||||||| |||||||||||  | | |||||||||||| ||||||| |||||||    
T  55397721 caatttggtcattgtctttgtaagttacttttaaattagtcccatactctataaatattttaaagcaattcatatctttgtcaaaagtttctcaatta 55397624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 45921940 - 45921893
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaa 137  Q
    ||||||||| |||||| |||||||| |||||| |||||||||||||||    
T  45921940 tttgtaagtcattctcgaattagtctctgactttattaatattttaaa 45921893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 55264670 - 55264623
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctcaattaatt 278  Q
    |||| ||||||| ||| | |||||||||||||||||||||||||||||    
T  55264670 aatatttcaaaagagtctgtgtctttgtcaaaagtttctcaattaatt 55264623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 40942598 - 40942664
Alignment:
Q  103 ctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaat 169  Q
    |||||||||||  |||| | ||||||||||||||| |||||  | |||||||| |||||||||||||    
T  40942598 ctcaaattagtgtctgattttattaatattttaaactagtcattgtctttgtcaaaagtttttcaat 40942664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 13119232 - 13119277
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| |||||||||||   |||||||||||||||||||||||||||    
T  13119232 aatatttcaaaatagtcgctgtctttgtcaaaagtttctcaattaa 13119277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 44137430 - 44137475
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| ||||||||||||| |||||||||||||| ||| ||||||||    
T  44137430 aatatttcaaaatagtatctgtctttgtcaaaaatttatcaattaa 44137475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 51103730 - 51103653
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||||||||| ||||||||| ||||||||    ||| ||||||| ||| |||||||||||||||  | |||||||||    
T  51103730 taaaccatcaaattggtccctatctttgtaccaaattttcaaattggtcactgactctattaataactcaaaatagtc 51103653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 54090873 - 54090978
Alignment:
Q  64 actaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttt 163  Q
    ||||||| ||||| ||||||  | | ||||||||| ||| |||||||||||    ||||| ||||||||| ||| ||||| || |||||||||||| |||    
T  54090873 actaaactatcaaattggtctttatttttgtaagtcattttcaaattagtcttatactctgttaatatttcaaactagtctatgtctttgtcgaaacttt 54090972  T
Q  164 ttcaat 169  Q
     |||||    
T  54090973 ctcaat 54090978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 55264542 - 55264591
Alignment:
Q  127 aatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcc 176  Q
    ||||||| ||||||||| || |||||||| ||||||| ||||||||||||    
T  55264542 aatatttcaaaatagtcaatgtctttgtcaaaagtttctcaattaagtcc 55264591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 22886484 - 22886524
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctca 271  Q
    ||||| ||||||||||| |||||||||||||| ||||||||    
T  22886484 aataactcaaaatagtacttgtctttgtcaaatgtttctca 22886524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 22938148 - 22938188
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctca 271  Q
    ||||| ||||||||||| |||||||||||||| ||||||||    
T  22938148 aataactcaaaatagtacttgtctttgtcaaatgtttctca 22938188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 49448294 - 49448250
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctcaatta 275  Q
    |||| |||||| |||| |||||||||||||||||||| |||||||    
T  49448294 aatatttcaaactagtctttgtctttgtcaaaagtttatcaatta 49448250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 276
Target Start/End: Original strand, 55446931 - 55447137
Alignment:
Q  71 catcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatt 170  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||| |||||||  ||| ||| ||||||    
T  55446931 catcaatttggtccctatctttgtaagtgattgtcaaattaatccatgactctattaatatttcaaaatagtccatgtctttgttaaaattttctcaatt 55447030  T
Q  171 aagtccttcatcatgtgnnnnnnnncatagaaacatgagtctggttgataaacttttgacaata-attcaaaatagtatttgtctttgtcaaaagtttct 269  Q
    || ||| ||||||||||        ||||||||||||||| |  || | ||| |||||||||||  |||||| |||| | ||||||||| |||| |||||    
T  55447031 aaatccctcatcatgtgaaaaaaaacatagaaacatgagtttaattaagaaaattttgacaatattttcaaagtagtttatgtctttgttaaaattttct 55447130  T
Q  270 caattaa 276  Q
     ||||||    
T  55447131 taattaa 55447137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 275
Target Start/End: Complemental strand, 39840991 - 39840782
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||| ||||||| ||  | |||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||| |||||||||  ||| ||| |    
T  39840991 taaaccaccaatttgatctatatctttgtaagtgattctcaaattagttcctaactttattaatatttcaaaatagtccctatctttgttaaaattttct 39840892  T
Q  166 caattaagtccttcatcatgtgnnnnnnnncatagaaacatgagtctggttgataaacttttgac-aataattcaaaatagtatttgtctttgtcaaaag 264  Q
    ||||||||||| |  |||| ||        |||||||||||||||||  |||| |   ||||||| |||| |||||||||||   || ||||||||||||    
T  39840891 caattaagtcccttgtcatatg-aaaaaaacatagaaacatgagtctaattgaaatttttttgacaaatatttcaaaatagtccatgcctttgtcaaaag 39840793  T
Q  265 tttctcaatta 275  Q
    |||||||||||    
T  39840792 tttctcaatta 39840782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 39840645 - 39840759
Alignment:
Q  72 atcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||  | | |||||| ||||||| |||| ||    
T  39840645 atcaaattgatccctgtctttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtcattgtttttgtcaaaagtttctcaa-ta 39840743  T
Q  172 agtccttcatcatgtg 187  Q
    ||||| || |||||||    
T  39840744 agtccctcgtcatgtg 39840759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 48338294 - 48338401
Alignment:
Q  69 accatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaa 168  Q
    |||||||| || ||| || ||||||||| ||||||| |||||||||  |||||||||||||| || |||||||||||| |||||||| ||||||| ||||    
T  48338294 accatcaaattagtctctatctttgtaaatgattcttaaattagtcattgactctattaatacttcaaaatagtccatgtctttgtcaaaagtttctcaa 48338393  T
Q  169 ttaagtcc 176  Q
    ||||||||    
T  48338394 ttaagtcc 48338401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 271
Target Start/End: Complemental strand, 33429196 - 33429014
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||||||||| | | |||||||||||    |||||||||||||||||||||| || |||||||| || ||||||||||||||||||| ||| |||||||    
T  33429196 tctttgtaagtcactttcaaattagtcatcaactctattaatattttaaaataatcaatatctttatcaaaagtttttcaattaagtctttcgtcatgtg 33429097  T
Q  188 nnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctca 271  Q
            || ||| | |||| |||  |||| |||| |||||||||| ||||||||||| |  |||||||||||||||||||||    
T  33429096 -acaaaaacaaagagaaatgaatctaattgagaaacatttgacaatatttcaaaatagtttacgtctttgtcaaaagtttctca 33429014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 20123990 - 20124099
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||||||| ||||||||| | ||||||||  |||||||||||||  | | ||| ||||||||||| |||||||| ||| |||||||| ||||||| |    
T  20123990 taaaccatcaaattggtccctatgtttgtaagatattctcaaattagcacttaactttattaatatttcaaaatagttcatctctttgtcaaaagtttct 20124089  T
Q  166 caattaagtc 175  Q
    ||||||||||    
T  20124090 caattaagtc 20124099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 55447259 - 55447175
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaa 172  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||  | ||||| || ||||||| ||||||||    
T  55447259 tctttgtaagtgattctcaaatcagtctctgactctcttaatattttaaaatagtctctgtctttctcaaaagtttctcaattaa 55447175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 42045773 - 42045860
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtc 175  Q
    |||||||||||||| ||||||||| ||| | ||||||||||||||| |||||||||  | ||| |||| |||||||||||||||||||    
T  42045773 tctttgtaagtgatcctcaaattaatccataactctattaatatttcaaaatagtcattgtctatgtcaaaagtttttcaattaagtc 42045860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 20124333 - 20124238
Alignment:
Q  75 aatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    ||||||||| || ||||||||||| ||| ||||||||||| |||||||||| ||||||| |||||||||  | | |||||| |||||||||||||||    
T  20124333 aatttggtctctgtctttgtaagtcatt-tcaaattagtctctgactctatcaatatttcaaaatagtcattgtttttgtcaaaagtttttcaatta 20124238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 51862747 - 51862681
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtc 155  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  51862747 tctttgtaaatgattttcaaattagtcc-tgactctattaatattttaaaatagtctttatctttgtc 51862681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 27812380 - 27812291
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcct 177  Q
    ||||||||||  ||||| |||||||||| ||||||||||| ||||| ||||||||| || |||||||  ||||||| ||||||| |||||    
T  27812380 tctttgtaagatattcttaaattagtccatgactctattactatttaaaaatagtctatgtctttgttaaaagtttctcaattaggtcct 27812291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 3910211 - 3910287
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagt 142  Q
    ||||| ||||| ||||||||| ||| ||||||  | |||||||||||||||| ||||||||||||||||||| ||||    
T  3910211 taaacaatcaagttggtccctatctctgtaagctactctcaaattagtccctaactctattaatattttaaactagt 3910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 45965903 - 45965791
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||| ||||| ||||||||| | ||||||||| | ||||||||||||   ||||||||||||||||| ||| ||||   ||||||| || ||||||| |    
T  45965903 taaactatcaaattggtccctgtatttgtaagtcactctcaaattagtttgtgactctattaatatttcaaactagttattatctttttcaaaagtttct 45965804  T
Q  166 caattaagtcctt 178  Q
    |||||| ||||||    
T  45965803 caattaggtcctt 45965791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 51862427 - 51862482
Alignment:
Q  78 ttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattt 133  Q
    |||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  51862427 ttggtctctgtctttgtaagtgattatcaaattagtccctgactctattgatattt 51862482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 29504744 - 29504854
Alignment:
Q  61 tcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaag 160  Q
    ||||||||| ||| || |||||| || || |||||| | |||||||||||||||| | |||||| |||||||||||| |||||  | ||||| |  ||||    
T  29504744 tcgactaaatcattaaattggtctctatcattgtaattcattctcaaattagtccataactctaataatattttaaactagtcattgtctttattaaaag 29504843  T
Q  161 tttttcaatta 171  Q
    |||||||||||    
T  29504844 tttttcaatta 29504854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 41709352 - 41709269
Alignment:
Q  102 tctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    |||||||||||||||  ||| |||||||||||||||  |||  ||||||||||  |||||||||||||||||||  ||||||||||    
T  41709352 tctcaaattagtccccaactttattaatattttaaataagtttatatctttgttaaaagtttttcaattaagtc--tcatcatgtg 41709269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 263
Target Start/End: Original strand, 1163398 - 1163561
Alignment:
Q  98 tgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtgnnnnnnnnca 197  Q
    ||||||||||||| |||  || |||||||||||||||||||||||  || | |||||| ||||||| |||||||||||  || |||||||         |    
T  1163398 tgattctcaaatt-gtctatgtctctattaatattttaaaatagtttatgtgtttgtcaaaagtttctcaattaagtctctcgtcatgtgaaaaaaat-a 1163495  T
Q  198 tagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaa 263  Q
    |||||||||  ||||  |||| |||||||||||| || |||||| |||| | ||||||||||||||    
T  1163496 tagaaacataggtctaattgaaaaacttttgacagtatttcaaagtagtctatgtctttgtcaaaa 1163561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 33428919 - 33428972
Alignment:
Q  119 actctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaa 172  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||    
T  33428919 actctattaatatttcaaaatagttcatatctttgtcaaaagtttctcaattaa 33428972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 40472832 - 40472925
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcat 181  Q
    ||||||||||| | |||||||||||||  |||||||||||| |||||||| ||||  || |||||||| ||||||| || |||| |||| ||||    
T  40472832 tctttgtaagttactctcaaattagtctttgactctattaaaattttaaactagtttatttctttgtcaaaagtttctcgattaggtccctcat 40472925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 48338627 - 48338574
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||||||||||| ||||||||||| |||||||||||||||| | |||||||||    
T  48338627 tttgtaagtgattatcaaattagtctctgactctattaatatatcaaaatagtc 48338574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 11413244 - 11413205
Alignment:
Q  236 ttcaaaatagtatttgtctttgtcaaaagtttctcaatta 275  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  11413244 ttcaaaatagtatttgtcttagtcaaaagtttctcaatta 11413205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 51862632 - 51862570
Alignment:
Q  201 aaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaa 263  Q
    ||||||||||||  |||| ||| ||||||||||| |||||||||||  |||||||||||||||    
T  51862632 aaacatgagtctaattgagaaatttttgacaatatttcaaaatagtcattgtctttgtcaaaa 51862570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 49782281 - 49782200
Alignment:
Q  82 tccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttt 163  Q
    ||||| ||||| |||||| || |||||||||||| | ||||||||||||||| |||||||| |||  ||| ||| |||||||    
T  49782281 tccctgtctttataagtgtttttcaaattagtccataactctattaatatttcaaaatagttcatgccttcgtcaaaagttt 49782200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 27812207 - 27812271
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatcttt 152  Q
    ||||||||||| ||||| ||||||||| |||| ||||||||||||| ||| |||| ||| |||||    
T  27812207 tctttgtaagtcattcttaaattagtctctgagtctattaatatttcaaattagttcatgtcttt 27812271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 46164184 - 46164120
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaata 130  Q
    ||||||| ||| |||| |||| ||||||||    |||||||||||||||||||||||||||||||    
T  46164184 taaaccaccaaattggaccctgtctttgtatcaaattctcaaattagtccctgactctattaata 46164120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 42045940 - 42045897
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctcaatt 274  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||    
T  42045940 aatatttcaaaatagtatatgtctttgtcaaaagtttttcaatt 42045897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 48338498 - 48338439
Alignment:
Q  215 ttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaatt 274  Q
    |||| ||||||||||||||| ||  ||||||| | |||||||||||||||||| ||||||    
T  48338498 ttgagaaacttttgacaatatttttaaatagtctatgtctttgtcaaaagtttatcaatt 48338439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 276
Target Start/End: Complemental strand, 48338570 - 48338539
Alignment:
Q  245 gtatttgtctttgtcaaaagtttctcaattaa 276  Q
    ||||||||||||||||||||||||||||||||    
T  48338570 gtatttgtctttgtcaaaagtttctcaattaa 48338539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 31300442 - 31300393
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaa 137  Q
    |||||||||| ||||||||||||||||  | |||||||| ||||||||||    
T  31300442 tctttgtaagagattctcaaattagtctataactctatttatattttaaa 31300393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 42045946 - 42045897
Alignment:
Q  121 tctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatt 170  Q
    ||||||||||||| ||||||||  || |||||||| ||||||||||||||    
T  42045946 tctattaatatttcaaaatagtatatgtctttgtcaaaagtttttcaatt 42045897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 48338352 - 48338397
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| |||||||||||   |||||||||||||||||||||||||||    
T  48338352 aatacttcaaaatagtccatgtctttgtcaaaagtttctcaattaa 48338397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 16298194 - 16298246
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaata 140  Q
    ||||||||||| | ||||||| ||||||  |||| ||||||||||||||||||    
T  16298194 tctttgtaagtcactctcaaactagtccacgactttattaatattttaaaata 16298246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 47337362 - 47337322
Alignment:
Q  102 tctcaaattagtccctgactctattaatattttaaaatagt 142  Q
    |||||||||||| |||||||||||||||| || ||||||||    
T  47337362 tctcaaattagttcctgactctattaataattcaaaatagt 47337322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 49547592 - 49547640
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaa 138  Q
    ||||||| | |||||||||||| ||  ||||||||||||||||||||||    
T  49547592 tttgtaaatcattctcaaattaatcattgactctattaatattttaaaa 49547640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 42709897 - 42710061
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||| || |||||||| ||||||| |    
T  42709897 taaactatcaaattggtccctgtctttgtaagtgattctcaaatcagtctccgactctattaatattttaaaatagtcaatgtctttgtcaaaagtttct 42709996  T
Q  166 caattaagtccttcatcatgtgnnnnnnnncatagaaacatgagtctggttgataaacttttgacaa 232  Q
    ||||||||||| || |||| ||        |||||||||||||||||  |||| |||||||||||||    
T  42709997 caattaagtccctcgtcatatg--aaaaaacatagaaacatgagtctaattgagaaacttttgacaa 42710061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 41009021 - 41008910
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||| ||| |||||| || | ||||||||| ||| |||||||| || ||||||||||||||||||||||||||||  |||||||||  ||||||| |    
T  41009021 taaaccaccaacttggtcactgtttttgtaagtcattttcaaattaatctctgactctattaatattttaaaatagtctctatctttgttaaaagtttct 41008922  T
Q  166 caattaagtcct 177  Q
    |||||| |||||    
T  41008921 caattaggtcct 41008910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 275
Target Start/End: Complemental strand, 42710239 - 42710041
Alignment:
Q  66 taaaccatcaatttggtc--cctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttt 163  Q
    ||||||||||||||||||  | ||| ||||||| |||||||||||||||||   ||||| |||||||||| |||||||||  | ||||| | ||||||||    
T  42710239 taaaccatcaatttggtcatcgtct-tttgtaaatgattctcaaattagtcgtcgactccattaatatttcaaaatagtc--tgtctttattgaaagttt 42710143  T
Q  164 ttcaattaagtccttcatcatgtgnnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaa 263  Q
     ||||||||||   || |||||||           | ||||||||||||  |||| |||||||||| |||| ||||||||||| |  |||||||||||||    
T  42710142 ctcaattaagtttctcgtcatgtga----------ataaacatgagtctaattgagaaacttttgataatatttcaaaatagtctaagtctttgtcaaaa 42710053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 12427825 - 12427900
Alignment:
Q  78 ttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttg 153  Q
    |||||| || ||||||||||| |||||||||||||| | ||||||||||||||||||||| |||||  ||||||||    
T  12427825 ttggtcactgtctttgtaagtcattctcaaattagttcatgactctattaatattttaaattagtcattatctttg 12427900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 33384104 - 33384172
Alignment:
Q  119 actctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||||||||||||||||||||||| || |||| ||  ||||||| ||||||||||| |||||||||||    
T  33384104 actctattaatattttaaaatagtctatgtcttcgttaaaagtttctcaattaagtcattcatcatgtg 33384172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 30935187 - 30935289
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaa-gtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttt 164  Q
    |||||||| || ||| ||||| ||||||||| || ||||| ||||||||    |||||||||||||||| ||| |||| |||||||||||| ||||||||    
T  30935187 taaaccattaaattgatccctatctttgtaaagtcattcttaaattagttttagactctattaatatttcaaactagttcatatctttgtcaaaagtttt 30935286  T
Q  165 tca 167  Q
    |||    
T  30935287 tca 30935289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 12428039 - 12427959
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatt 170  Q
    |||||| || |||||||||||  | ||||| | ||||||||||| ||| |||||||| |||||||| ||||||||||||||    
T  12428039 tttgtaggtaattctcaaattgattcctgattttattaatatttcaaactagtccatgtctttgtcaaaagtttttcaatt 12427959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 26752078 - 26752010
Alignment:
Q  102 tctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatt 170  Q
    ||||||||||||| |||||| | ||| |||||||||||||||  | |||||||| ||||||||||||||    
T  26752078 tctcaaattagtctctgactttgttattattttaaaatagtctttgtctttgtcaaaagtttttcaatt 26752010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 16953101 - 16953156
Alignment:
Q  78 ttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattt 133  Q
    ||||||||| ||||||||||| |||||||||||||| |  ||||||||||||||||    
T  16953101 ttggtccctgtctttgtaagtcattctcaaattagttcaagactctattaatattt 16953156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 30935419 - 30935349
Alignment:
Q  85 ctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtc 155  Q
    |||||||||||||| | ||||||||||||| | |||| ||||||||||| ||| || ||| ||||||||||    
T  30935419 ctctctttgtaagtcactctcaaattagtctccgactttattaatatttcaaactaatccctatctttgtc 30935349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 32296474 - 32296420
Alignment:
Q  117 tgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    |||||||| ||||||||||||| | || ||||||||||| |||||||||||||||    
T  32296474 tgactctagtaatattttaaaacaatctatatctttgtcaaaagtttttcaatta 32296420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 24452017 - 24451952
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatat 131  Q
    ||||||||||| ||||||  | ||||||||||  | |||||||||| |||||||||||||||||||    
T  24452017 taaaccatcaaattggtctttatctttgtaagccactctcaaattaatccctgactctattaatat 24451952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 10525124 - 10525021
Alignment:
Q  78 ttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcct 177  Q
    |||||| || ||||||||||| | ||||||||| ||||| ||| |||||||||||| ||| |||      |||||||| ||||||| ||||||| ||||     
T  10525124 ttggtctctatctttgtaagtcactctcaaatttgtccccgaccctattaatatttcaaactag------tctttgtcaaaagtttctcaattaggtccc 10525031  T
Q  178 tcatcatgtg 187  Q
    || |||||||    
T  10525030 tcgtcatgtg 10525021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 16810429 - 16810495
Alignment:
Q  67 aaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattt 133  Q
    |||| ||||| |||||| |  ||||||||||| | ||||||||||||||| |||| |||||||||||    
T  16810429 aaacgatcaaattggtctcggtctttgtaagtcactctcaaattagtccccgactatattaatattt 16810495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 21249057 - 21248991
Alignment:
Q  104 tcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatt 170  Q
    ||||||||||  || ||| ||||||||||||||| |||||   ||||||||| ||||||||||||||    
T  21249057 tcaaattagtttctaactttattaatattttaaattagtctccatctttgtcaaaagtttttcaatt 21248991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 16830563 - 16830518
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattt 133  Q
    ||||||||||| |||||||||||||||   ||||||||||||||||    
T  16830563 tctttgtaagtcattctcaaattagtcaaagactctattaatattt 16830518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 21297716 - 21297793
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||||||||| ||||||||| ||||||||    ||||| || |||||| |||||||||||||||  | |||||||||    
T  21297716 taaaccatcaaattggtccctgtctttgtaccaaattcttaatttagtctctgactctattaataactcaaaatagtc 21297793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 40089071 - 40089030
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctcaa 272  Q
    |||||||||||||||| | ||||||||||||| |||||||||    
T  40089071 aataattcaaaatagtttctgtctttgtcaaatgtttctcaa 40089030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 41008801 - 41008850
Alignment:
Q  93 gtaagtgattctcaaattagtccctgactctattaatattttaaaatagt 142  Q
    |||||| ||||||||| |||||  ||| ||||||||||||||||||||||    
T  41008801 gtaagtcattctcaaactagtctgtgattctattaatattttaaaatagt 41008850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 16808034 - 16808098
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaata 130  Q
    ||||| ||||| || |||||| ||||||||||| | ||||||||||||||  || ||||||||||    
T  16808034 taaacgatcaaatttgtccctatctttgtaagtaactctcaaattagtcctcgattctattaata 16808098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 33189946 - 33189986
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctca 271  Q
    ||||| ||||||| |||||||||||| ||||||||||||||    
T  33189946 aataactcaaaatggtatttgtctttatcaaaagtttctca 33189986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 43669524 - 43669487
Alignment:
Q  104 tcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  43669524 tcaaattagtc--tgactctattaatattttaaaatagtc 43669487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 275
Target Start/End: Complemental strand, 40650101 - 40649902
Alignment:
Q  74 caatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaag 173  Q
    ||||||||||| | |||||||||||||||||||||||||||| | |||| |||||||||| |||||| |  || |||||||| |  |||| |||||| |     
T  40650101 caatttggtccatgtctttgtaagtgattctcaaattagtcc-taactccattaatatttcaaaataatatatgtctttgtcaatggtttctcaattgaa 40650003  T
Q  174 tccttcatcatgtgnnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaat 273  Q
    ||  || |||||||        |||||||||||||||||  |||||||||||||||||||| |||||||||||  ||||||||||||||||||||| |||    
T  40650002 tctctcgtcatgtgaaaaaaa-catagaaacatgagtctaattgataaacttttgacaatatttcaaaatagtcattgtctttgtcaaaagtttcttaat 40649904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 90 - 276
Target Start/End: Original strand, 15395197 - 15395384
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg-n 188  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||  | |||||||  |||  || |||||||||||| || | |||||      
T  15395197 tttgtaaatgattctcaaattagtctatgactctattaatattttaaaatagtctctgtctttgttaaaaaattctcaattaagtccctcgttatgtgaa 15395296  T
Q  189 nnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
           |||||| ||||||||||  |||| |||  |||||||||| |||||| ||||   ||||||| |||||||||||||||||||    
T  15395297 aaaaaaacatagagacatgagtctaattgagaaaaatttgacaatatttcaaagtagttcatgtctttatcaaaagtttctcaattaa 15395384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 10377648 - 10377535
Alignment:
Q  63 gactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtt 162  Q
    |||||||||| ||| ||||||||| ||||||||||| ||| |||||||||||  ||||||||||||||||| ||| |||||||| | | |||| ||| ||    
T  10377648 gactaaaccaccaagttggtccctgtctttgtaagtcattatcaaattagtctttgactctattaatatttcaaattagtccatgtttgtgtcaaaattt 10377549  T
Q  163 tttcaattaagtcc 176  Q
    | ||||||| ||||    
T  10377548 tctcaattaggtcc 10377535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 40649757 - 40649878
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    |||| |||||| ||| || || |||||||||||||||||||||||||| | | | ||||||||||||| ||||| || ||| |||||||  ||||||| |    
T  40649757 taaatcatcaaattgttctctgtctttgtaagtgattctcaaattagttcttaattctattaatatttcaaaatggtacatgtctttgttaaaagtttct 40649856  T
Q  166 caattaagtccttcatcatgtg 187  Q
    ||||||||||| || |||||||    
T  40649857 caattaagtccctcgtcatgtg 40649878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 1818482 - 1818406
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagt 142  Q
    ||||||||||| ||||||| | | |||||||||||||||||||||| |  |||||||||||||||||||||||||||    
T  1818482 taaaccatcaagttggtccttgtttttgtaagtgattctcaaattaatatctgactctattaatattttaaaatagt 1818406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 38783872 - 38783969
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttt 163  Q
    |||||||||| |||| ||  | ||||||||||| | | |||||||||||| |||||||||||||||||||||||||||  | |||||||| |||||||    
T  38783872 taaaccatcagtttgatctttatctttgtaagtcactttcaaattagtccatgactctattaatattttaaaatagtcattgtctttgtcaaaagttt 38783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 27293283 - 27293365
Alignment:
Q  89 ctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    |||||||| | ||||||||||||||| |||||||||||||||||| ||| |||| | |||||||| | ||||||| |||||||    
T  27293283 ctttgtaaatcattctcaaattagtctctgactctattaatatttcaaattagttcttatctttgccaaaagtttctcaatta 27293365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 34835817 - 34835719
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttt 164  Q
    ||||||||||| ||||||||| | ||||||||| ||| | ||||||||  || ||||||||||||||||||| |||||| |||| ||| | ||||||||    
T  34835817 taaaccatcaaattggtccctatttttgtaagttatttttaaattagtttctaactctattaatattttaaattagtccctatcattgccaaaagtttt 34835719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 46410624 - 46410734
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgatt-ctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttt 164  Q
    ||||||||| | ||||||| | ||||||||||||||| || |||||||||| ||| | ||||||||||| |||||||||    |||||||| ||||||||    
T  46410624 taaaccatcgaattggtccatgtctttgtaagtgatttcttaaattagtccatgaatatattaatatttcaaaatagtctcagtctttgtcaaaagtttt 46410723  T
Q  165 tcaattaagtc 175  Q
    || ||||||||    
T  46410724 tcgattaagtc 46410734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 845173 - 845112
Alignment:
Q  215 ttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| |||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  845173 ttgagaaacttttgataatatttcaaaataatatttgtctttgtcagaagtttctcaattaa 845112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 6061592 - 6061659
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattt 133  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||| | ||| |||||||||||    
T  6061592 taaaccatcaatttggtcatcgtctttgtaagtgattctcaaattagtccttaactttattaatattt 6061659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 28504691 - 28504768
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    |||| |||||| || ||| || ||||||||||| |||||||||||||||  ||||||||||||||||| ||| |||||    
T  28504691 taaatcatcaaattcgtctctgtctttgtaagtcattctcaaattagtctatgactctattaatatttcaaactagtc 28504768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 46410922 - 46410845
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||||| ||| ||||||  | |||||||||||||||||||| ||||||  |||||||| |||||||| |||||||||    
T  46410922 taaaccaccaaattggtcattgtctttgtaagtgattctcaatttagtctatgactctaataatatttcaaaatagtc 46410845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 38576545 - 38576659
Alignment:
Q  57 tttttcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcg 156  Q
    |||||||| ||||| || || ||||||| | ||||||||| | |||||||||||||||  ||| ||||||||||||| |||  ||||  | ||||| ||     
T  38576545 tttttcgagtaaacaattaaattggtccttatctttgtaaatcattctcaaattagtctttgattctattaatatttcaaaccagtctctgtctttatca 38576644  T
Q  157 aaagtttttcaatta 171  Q
    |||| ||||||||||    
T  38576645 aaagattttcaatta 38576659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 7790509 - 7790405
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    |||| |||||| |||||| || ||| ||||||| ||||||||||||||   ||||||||||||||||| ||| ||||   ||||||| || ||||||| |    
T  7790509 taaatcatcaaattggtctctatctgtgtaagtcattctcaaattagt-tatgactctattaatatttcaaattagtttctatctttatcaaaagtttct 7790411  T
Q  166 caatta 171  Q
    ||||||    
T  7790410 caatta 7790405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 23399706 - 23399652
Alignment:
Q  220 aaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||||||||| |||| |||||||||||||  ||||||||||||||| ||||||||||    
T  23399706 aaacttttgataatatttcaaaatagtat--gtctttgtcaaaagtctctcaattaa 23399652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 50147275 - 50147223
Alignment:
Q  123 tattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtc 175  Q
    ||||||||||||||| ||||| |||| |||||| ||||||||| |||||||||    
T  50147275 tattaatattttaaactagtctatatttttgtcaaaagtttttgaattaagtc 50147223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 15395497 - 15395423
Alignment:
Q  97 gtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    ||||||||||||||||||  ||  | ||||||||||||||||||||   | | |||||| |||||||||||||||    
T  15395497 gtgattctcaaattagtcattgtatttattaatattttaaaatagttactgtttttgtcaaaagtttttcaatta 15395423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 31063563 - 31063493
Alignment:
Q  74 caatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtcc 144  Q
    ||||||||||| | |||||| |||||||| |||||||||||   |||||||||||| | | ||||||||||    
T  31063563 caatttggtccttatctttgcaagtgattatcaaattagtcatcgactctattaatgtctcaaaatagtcc 31063493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 7790300 - 7790381
Alignment:
Q  106 aaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||||||  |||||| ||||||||||||||| || |   | |||||||| ||||||||| |||| ||||| ||||||||||    
T  7790300 aaattagtttctgactttattaatattttaaattaatttttgtctttgtcaaaagttttttaatttagtccctcatcatgtg 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 10595578 - 10595497
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaat 169  Q
    ||||||||||  ||| |||||||| ||| | ||||||||||||||| ||| |||||  | |||||||| ||||||| |||||    
T  10595578 tctttgtaagacattgtcaaattaatccataactctattaatatttcaaattagtcattgtctttgtcaaaagtttctcaat 10595497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 31063254 - 31063317
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttg 153  Q
    ||||||||||| ||||||||||||| | |||||| ||||||||||| || ||||||||| ||||||    
T  31063254 tctttgtaagtaattctcaaattag-ctctgact-tattaatatttcaagatagtccatgtctttg 31063317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 34835628 - 34835689
Alignment:
Q  230 caataattcaaaatagtatttgtctttgtcaaaagtttctcaattaatttctatatcatgtg 291  Q
    ||||| |||||| |||| | ||||||||||||||||||||||||| | | || |||||||||    
T  34835628 caatatttcaaactagtctctgtctttgtcaaaagtttctcaatttagtcctttatcatgtg 34835689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 845016 - 845072
Alignment:
Q  114 ccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatt 170  Q
    |||| ||||||||||||||| |||||||||| | |||||||| || |||| ||||||    
T  845016 cccttactctattaatatttcaaaatagtccttgtctttgtcaaatgtttctcaatt 845072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 8792969 - 8793021
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaata 140  Q
    ||||||||||| | ||||||||||||| |  ||||||||||||||| ||||||    
T  8792969 tctttgtaagtcactctcaaattagtctccaactctattaatatttcaaaata 8793021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 50147105 - 50147185
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatt 170  Q
    ||||||||| ||||| |||||| | | ||| ||||||||||||||||| || ||  |||||||||  ||||||||| ||||    
T  50147105 tttgtaagttattcttaaattaattcttgaatctattaatattttaaattaatcattatctttgttaaaagttttttaatt 50147185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 8840119 - 8840016
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||||||||||||||||| | |||||||| |||||||| ||||||||| |||||||||||||||| |||||||||| | |||||||| |||||||||    
T  8840119 taaaccatcaatttggtccctgtatttgtaagggattctcagattagtccccgactctattaatatttcaaaatagtccctgtctttgtcaaaagttttt 8840020  T
Q  166 caat 169  Q
    ||||    
T  8840019 caat 8840016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 8285306 - 8285228
Alignment:
Q  97 gtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtc 175  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||    
T  8285306 gtgattctcaaattagtccctgactatattaatattttaaaatagtctatatctttgtcaaaagtttctcaattaagtc 8285228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 12640310 - 12640190
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||| || |||||||||  |   |||||| |||||||||    
T  12640310 taaaccatcaaattggtccctgtctttgtaagtgattctcaaattagtcactgaatctattaata-ttcaaaatagtctttgattttgtcaaaagttttt 12640212  T
Q  166 caattaagtccttcatcatgtg 187  Q
    ||||||||||| || |||||||    
T  12640211 caattaagtccctcgtcatgtg 12640190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 9637851 - 9637749
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||   ||||||||||| ||| || |||||||| ||||||| |    
T  9637851 taaaccatcaatttggtccgtgtctttgtaagtgattctcaaattagtccctaactctat---tattttaaaatggtcaatgtctttgtcaaaagtttct 9637755  T
Q  166 caatta 171  Q
    ||||||    
T  9637754 caatta 9637749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 276
Target Start/End: Original strand, 31050969 - 31051156
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||| |||||||||| | |||||||| ||||||||| |||||||| ||||||||||   |||||||| ||||||| |||||||||| | || | |||||    
T  31050969 tctttataagtgattcactaattagtctctgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttctcaattaagttcctcgt-atgtg 31051067  T
Q  188 nnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
             ||||||| ||||||||  |||| |||| |||||||||| ||| ||||||| | ||||||||||||||||||||| |||||    
T  31051068 aaaaaaataatagaaatatgagtctaattgaaaaacatttgacaatatttctaaatagtctatgtctttgtcaaaagtttctccattaa 31051156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 20399093 - 20399017
Alignment:
Q  78 ttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgt 154  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||||||||| ||| |||||| | |||||||    
T  20399093 ttggtccctatctttgtaagacattctcaaattagtccctgactctattaatatttcaaattagtccttgtctttgt 20399017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 31046218 - 31046130
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttt-tcaattaagtc 175  Q
    ||||||||||||||||||||||||  | | |||||||||||||||||||||||||| ||  ||||||| |||||||| |||||||||||    
T  31046218 tctttgtaagtgattctcaaattatcctccgactctattaatattttaaaatagtctatgcctttgtcaaaagttttctcaattaagtc 31046130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 31066159 - 31066061
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttt-tcaattaagtccttcatcatg 185  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||  | ||||| || ||| |||| ||||||||||| ||| |||||    
T  31066159 tctttgtaagtgattcttaaattagcccccgactctattaatattttaaaatagtctctgtctttatcaaaatttttctcaattaagtctttcgtcatg 31066061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 1862475 - 1862390
Alignment:
Q  58 ttttcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||||| ||||||||||||||| || || ||||||| ||||||| |||||||||||  ||||||||||||||||| |||| ||||    
T  1862475 ttttcgagtaaaccatcaatttgttcactgtctttgtcagtgattatcaaattagtctttgactctattaatatttcaaaacagtc 1862390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 31051279 - 31051191
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttt-tcaattaagtc 175  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||  |   |||||| |||||||| |||||||||||    
T  31051279 tctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtctctgcttttgtcaaaagttttctcaattaagtc 31051191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 8285012 - 8285116
Alignment:
Q  72 atcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaata-gtccatatctttgtcgaaagtttttcaatt 170  Q
    ||||||||||||  | ||||||||||||||| | || ||||||  |||||||||||||||||||||||| || | | |||||||| ||||||| ||||||    
T  8285012 atcaatttggtcgttttctttgtaagtgatttttaatttagtctatgactctattaatattttaaaataagttc-tgtctttgtcaaaagtttctcaatt 8285110  T
Q  171 aagtcc 176  Q
    ||||||    
T  8285111 aagtcc 8285116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 11275887 - 11275786
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    |||||||| || ||| ||| | ||||||||| | ||||||||||||||| |||||| ||||||||||||||| ||||   ||| |||||| |||||||||    
T  11275887 taaaccattaaattgttccatgtctttgtaaatcattctcaaattagtctctgactttattaatattttaaattagtttctatatttgtcaaaagttttt 11275788  T
Q  166 ca 167  Q
    ||    
T  11275787 ca 11275786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 276
Target Start/End: Original strand, 31065868 - 31066036
Alignment:
Q  108 attagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtgnnnnnnnnca-tagaaacat 206  Q
    ||||||| || ||||||||||||||| |||||||||  | |||||||| ||||||| |||||||||| | || | |||||         | |||||||||    
T  31065868 attagtctctaactctattaatatttcaaaatagtcattgtctttgtcaaaagtttctcaattaagttcctcgt-atgtgaaaaaaaaaaatagaaacat 31065966  T
Q  207 gagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    ||||||  |||| |||| |||||||||| ||| | ||||| | ||||||||||||||||||||| |||||    
T  31065967 gagtctaattgaaaaacgtttgacaatatttctatatagtctatgtctttgtcaaaagtttctccattaa 31066036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 36184838 - 36184730
Alignment:
Q  63 gactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtt 162  Q
    |||||||  |||||||||||   | ||||||||| | | ||||||||||||| || ||||||||| ||||| |||||||||  | |||||||| ||||||    
T  36184838 gactaaattatcaatttggtatttgtctttgtaaatcactctcaaattagtctctaactctattagtatttcaaaatagtcactgtctttgtcaaaagtt 36184739  T
Q  163 tttcaatta 171  Q
    |||||||||    
T  36184738 tttcaatta 36184730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 275
Target Start/End: Complemental strand, 27354600 - 27354416
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||||||||||||| ||||||  |||  |||||||||| |||||| |||||||||  | ||||| || || |||| | |||||||||  || |||||||    
T  27354600 tctttgtaagtgattttcaaatctgtctatgactctattcatatttcaaaatagtctctctctttatcaaatgtttcttaattaagtcactcttcatgtg 27354501  T
Q  188 nnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaatta 275  Q
            ||||||  |||| ||||  ||||||||||||| | |||| || |||||||| |||||||||||||||||||| |||||||    
T  27354500 aaaaaa--catagac-catgggtctaattgataaacttttcataatatttgaaaatagtttttgtctttgtcaaaagtttatcaatta 27354416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 5971966 - 5971883
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaag 173  Q
    ||||||||| ||| ||| ||||||| | |||||||||||||||||||| |||||  | |||||||| ||| ||| |||||||||    
T  5971966 tttgtaagtcattttcagattagtctcagactctattaatattttaaactagtcattgtctttgtcaaaactttctcaattaag 5971883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 39643020 - 39643119
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||||||||| | ||| ||||||||   |||||||||||||||||||||||  | | | ||||| || ||||||| ||||||||||| ||| |||||||    
T  39643020 tctttgtaagttactctaaaattagtttatgactctattaatattttaaaatgcttcttgtctttatcaaaagtttatcaattaagtctttcgtcatgtg 39643119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 1189371 - 1189440
Alignment:
Q  118 gactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    |||||||||||||||| ||| || |  ||||||||||| |||||||||||||||| ||  ||||||||||    
T  1189371 gactctattaatatttcaaactaatttatatctttgtcaaaagtttttcaattaaatcactcatcatgtg 1189440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 27354301 - 27354346
Alignment:
Q  98 tgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||    
T  27354301 tgatcctcaaattagtccctaactatattaatattttaaaatagtc 27354346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 36184644 - 36184705
Alignment:
Q  215 ttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| |||| ||||| |||| |||||| ||||||| |||||||||||||||||||| |||||    
T  36184644 ttgagaaacctttgataatatttcaaagtagtattcgtctttgtcaaaagtttctcgattaa 36184705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 39643146 - 39643207
Alignment:
Q  215 ttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| ||| |||||| |||| ||||||||||||| ||||| ||||||||||||||| |||||    
T  39643146 ttgagaaatttttgataatatttcaaaatagtatatgtctctgtcaaaagtttctcgattaa 39643207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 8285202 - 8285150
Alignment:
Q  224 ttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    ||||||||||| |  |||||||| |||||| ||||||||||||||||||||||    
T  8285202 ttttgacaatattataaaatagtctttgtcattgtcaaaagtttctcaattaa 8285150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 11243235 - 11243339
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    |||||||||||||| ||| || ||||| ||| | | | |||||||||||   || | |||||||||||||||||||||| | ||||||   ||||||| |    
T  11243235 taaaccatcaatttagtctctatctttataaatcactttcaaattagtc---gattatattaatattttaaaatagtccttgtctttgcaaaaagtttct 11243331  T
Q  166 caattaag 173  Q
    ||||||||    
T  11243332 caattaag 11243339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 31046034 - 31046095
Alignment:
Q  215 ttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| |||| |||||||||| ||| ||||||| | |||||||| |||||||||||| |||||    
T  31046034 ttgaaaaacgtttgacaatatttctaaatagtctatgtctttgccaaaagtttctccattaa 31046095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 39643315 - 39643246
Alignment:
Q  102 tctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    |||||||||| |||  ||||| |||||||||| |||||||||  | | |||||| |||||||||||||||    
T  39643315 tctcaaattaatccacgactccattaatatttcaaaatagtcattgtttttgtcaaaagtttttcaatta 39643246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 1862284 - 1862328
Alignment:
Q  127 aatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    |||||||||||||| || |||| |||||||||||||| |||||||    
T  1862284 aatattttaaaatattctatatttttgtcgaaagtttctcaatta 1862328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 4902222 - 4902270
Alignment:
Q  123 tattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    ||||||||||||||| |||||| |||||||| | ||||||| |||||||    
T  4902222 tattaatattttaaattagtccctatctttgccaaaagtttctcaatta 4902270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 9900231 - 9900283
Alignment:
Q  119 actctattaatattttaaaatagtccatatctttgtcgaaagtttttcaatta 171  Q
    |||||||||||||||||||||| |   |||||||||| ||||||| |||||||    
T  9900231 actctattaatattttaaaataatttttatctttgtcaaaagtttctcaatta 9900283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 36184522 - 36184606
Alignment:
Q  92 tgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcc 176  Q
    ||||||| | |||||||||||||  | ||| ||||||||||| |||||| ||  ||||| |||| ||| ||| ||||||||||||    
T  36184522 tgtaagtcactctcaaattagtctataactttattaatatttcaaaataatcattatctatgtcaaaaatttctcaattaagtcc 36184606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 57 - 187
Target Start/End: Complemental strand, 39760489 - 39760359
Alignment:
Q  57 tttttcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcg 156  Q
    ||||| || |||||||| || |||||| || |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||     
T  39760489 ttttttgagtaaaccattaaattggtctctatctttgtaagtgattctcaaattagtccatgactatattaatatttcaaaatagttcatatctttgtca 39760390  T
Q  157 aaagtttttcaattaagtccttcatcatgtg 187  Q
    ||| | | |||||||||||| || |||||||    
T  39760389 aaaatctctcaattaagtccctcgtcatgtg 39760359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 22191613 - 22191507
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatc-tttgtcgaaagtttt 164  Q
    ||||||| ||||||| ||| |  |||||||||| | |||||||||||||||||||||||||||||||||||||||||| || || |||||  ||||||||    
T  22191613 taaaccaccaatttgatccttgcctttgtaagtcactctcaaattagtccctgactctattaatattttaaaatagtctatgtcttttgttaaaagtttt 22191514  T
Q  165 tcaatta 171  Q
    |||||||    
T  22191513 tcaatta 22191507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 276
Target Start/End: Complemental strand, 32503121 - 32502936
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtgnn 189  Q
    ||||||||| ||| ||||||||||| |  |||||||| ||||||||||||||||  | |||||||| |||| || |||||||||||| || |||| ||      
T  32503121 tttgtaagtcattatcaaattagtctcacactctattgatattttaaaatagtcattgtctttgtcaaaagattctcaattaagtccctcgtcatatgat 32503022  T
Q  190 nnnnnncatagaaacatgag-tctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
          |||||| ||| ||| |||  ||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||    
T  32503021 aaaaa-catagagaca-gagatctaattgataaacttttgataatatttcaaaatagtctttgtctttgtcaaaattttttcaattaa 32502936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 272
Target Start/End: Original strand, 39760151 - 39760327
Alignment:
Q  94 taagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtgnnnnnn 193  Q
    ||||||||| | |||||||| |   ||||||||||||||| ||||||||| || | ||| || ||||||| |||||||| || ||| |||||||          
T  39760151 taagtgatttttaaattagttctcaactctattaatatttcaaaatagtctatgtttttatcaaaagtttctcaattaaatcattcgtcatgtgaataaa 39760250  T
Q  194 nncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaa 272  Q
      |||||||||||||||||  |||| ||||||||| ||||| || ||||||||  |||||||||| |||||||||||||    
T  39760251 --catagaaacatgagtcttattgagaaacttttggcaatattttaaaatagtcattgtctttgttaaaagtttctcaa 39760327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 32014077 - 32013958
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||| |||||||||| || | |||||||||||||||||||||||||  |||||||||| |||||| |||||||||  | |||||||| ||| ||| |    
T  32014077 taaaccaccaatttggtcgctgtatttgtaagtgattctcaaattagtctatgactctattgatatttcaaaatagtcactgtctttgtc-aaaatttct 32013979  T
Q  166 caattaagtccttcatcatgt 186  Q
    ||||||| ||| || ||||||    
T  32013978 caattaaatccctcgtcatgt 32013958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 32502779 - 32502897
Alignment:
Q  53 taactttttcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatcttt 152  Q
    ||||| |||||| |||||||||||||| |||| | | ||||||||| |||||||||||||| ||| ||| ||||| ||||| |||||||| ||| |||||    
T  32502779 taactgtttcgagtaaaccatcaattttgtccttgtttttgtaagtcattctcaaattagttcctcactttattagtatttcaaaatagttcatgtcttt 32502878  T
Q  153 gtcgaaagtttttcaatta 171  Q
    ||  || |||| |||||||    
T  32502879 gttaaatgtttctcaatta 32502897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 33939948 - 33940002
Alignment:
Q  221 aacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaatta 275  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||||||    
T  33939948 aacttttgacaatattttaaaatagtatatgtctttgtcaaaagtttctcaatta 33940002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 33940112 - 33940026
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcc 176  Q
    |||||||||||||||||||||||||  ||||| ||||||||||| |||||||||  | | ||| || ||||||| ||||||||||||    
T  33940112 tttgtaagtgattctcaaattagtcgttgactttattaatatttcaaaatagtcactgtttttttcaaaagtttctcaattaagtcc 33940026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 44327883 - 44327957
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaata 140  Q
    ||||||||||||||||||  | ||||||||||||||| |||||||||| | | | | ||||||||||||||||||    
T  44327883 taaaccatcaatttggtctttatctttgtaagtgattatcaaattagttcataattttattaatattttaaaata 44327957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 17658794 - 17658865
Alignment:
Q  104 tcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtc 175  Q
    |||||||||||||  ||||||||||||||| |||||||||  | |||||||| ||| ||| |||||||||||    
T  17658794 tcaaattagtccccaactctattaatatttcaaaatagtcattgtctttgtcaaaaatttctcaattaagtc 17658865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 33939812 - 33939879
Alignment:
Q  73 tcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaata 140  Q
    |||||||| || || | ||||||||||||||| |||||||||  | ||||||||||||||||||||||    
T  33939812 tcaatttgatctctatttttgtaagtgattcttaaattagtctataactctattaatattttaaaata 33939879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 3116875 - 3116829
Alignment:
Q  129 tattttaaaatagtccatatctttgtcgaaagtttttcaattaagtc 175  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||    
T  3116875 tattttaaaatagttcatatctttgtcaaaagtttctcaattaagtc 3116829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 8033575 - 8033636
Alignment:
Q  215 ttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| ||||||||||||||  ||||||||| |  |||||||||| |||||||||||||||||    
T  8033575 ttgagaaacttttgacaatctttcaaaataatccttgtctttgttaaaagtttctcaattaa 8033636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 17184756 - 17184833
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||| ||||| ||||| | | ||||||||||  ||| ||||| ||||| |||||||||||||||||||||| |||||    
T  17184756 taaactatcaaattggttcatgtctttgtaagctattatcaaactagtctctgactctattaatattttaaactagtc 17184833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 22191390 - 22191483
Alignment:
Q  94 taagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||| ||| |||||||||||  | |||  ||||||||||||||||||||  | |||||||| ||||||| || ||||||||| || |||||||    
T  22191390 taagtcattttcaaattagtctataacttaattaatattttaaaatagtctttgtctttgtcaaaagtttctctattaagtccctcgtcatgtg 22191483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 3117097 - 3117048
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaa 137  Q
    ||||||||| ||||||| ||||||||   |||||||||||||||||||||    
T  3117097 tctttgtaaatgattcttaaattagtttatgactctattaatattttaaa 3117048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 17658817 - 17658862
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| |||||||||||  ||||||||||||||| ||||||||||||    
T  17658817 aatatttcaaaatagtcattgtctttgtcaaaaatttctcaattaa 17658862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 17658920 - 17658961
Alignment:
Q  127 aatattttaaaatagtccatatctttgtcgaaagtttttcaa 168  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||    
T  17658920 aatatttcaaaatagtcaatatctttgtcaaaagtttttcaa 17658961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 22191431 - 22191468
Alignment:
Q  239 aaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  22191431 aaaatagtctttgtctttgtcaaaagtttctctattaa 22191468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 26407767 - 26407678
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtc 155  Q
    |||| ||||||||| |||||| ||||||||    ||| ||| ||| ||||||||||||||||||| || ||||| |||| | ||||||||    
T  26407767 taaatcatcaatttagtccctgtctttgtaccaaattttcatattggtccctgactctattaataattcaaaatggtccctgtctttgtc 26407678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 275
Target Start/End: Original strand, 5974 - 6173
Alignment:
Q  74 caatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaag 173  Q
    ||||||| ||||| |||||| ||||  ||||||||||||||||||| | ||||||||||| |||| ||||  | | |||||  |||   || ||||||||    
T  5974 caatttgatccctatctttgcaagtagttctcaaattagtccctgattttattaatatttcaaaacagtcagtgtttttgtaaaaaaaatt-caattaag 6072  T
Q  174 tccttcatcatgtgnnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaat 273  Q
    ||| || |||||||        |||||||||||||||||  |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  6073 tccctcgtcatgtgaaaaaaa-catagaaacatgagtctaattgagaaacttttgacaataattcaaaatagtctctgtctttgtcaaaagtttctcaat 6171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 6319 - 6153
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||| ||||| ||||||||| | ||||||||| |||||||||||||||  ||||||||||||||||| ||||||||   |  ||||||  ||||||| |    
T  6319 taaactatcaaattggtccctgtttttgtaagttattctcaaattagtctttgactctattaatatttcaaaatagtttttgcctttgttaaaagtttct 6220  T
Q  166 caattaagtccttcatcatgtg-nnnnnnnncatagaaacatgagtctggttgataaacttttgacaa 232  Q
    ||||||||| ||||||||| ||         |||||||||||||||||  |||| |||||||||||||    
T  6219 caattaagt-cttcatcatatgaaaaaaaaacatagaaacatgagtctaattgagaaacttttgacaa 6153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 6258 - 6213
Alignment:
Q  231 aataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    |||| ||||||||||| |||| |||||| |||||||||||||||||    
T  6258 aatatttcaaaatagtttttgcctttgttaaaagtttctcaattaa 6213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 276
Target Start/End: Original strand, 32029405 - 32029594
Alignment:
Q  86 tctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatg 185  Q
    ||||| |||||||||||||||||||| || |||||||| ||||||||| |||||||| | |||||||||  |||||||||||||||||||| || |||||    
T  32029405 tctctctgtaagtgattctcaaattaatctctgactctgttaatatttcaaaatagt-cttatctttgttaaaagtttttcaattaagtccctcgtcatg 32029503  T
Q  186 tgnnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtc-tttgtcaaaagtttctcaattaa 276  Q
    |         ||||||||||||  | |  |||| |||||| || ||||| ||||||||||| | |||| |||||||||||||||||||||||    
T  32029504 t-aaaaaaaacatagaaacatggttataattgagaaacttctgccaatatttcaaaatagtctatgtcttttgtcaaaagtttctcaattaa 32029594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 21136596 - 21136677
Alignment:
Q  95 aagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcc 176  Q
    |||| |||||||||||||||  ||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||    
T  21136596 aagtcattctcaaattagtctttgactctattaatatttcaaaatagtccttatctttgtcaaaagtttttcaattaggtcc 21136677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 41424397 - 41424497
Alignment:
Q  75 aatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagt 174  Q
    ||||||||| || ||||||||||| ||| |||||| |||| |||||||||||||||||||||| ||||   ||| |||||| ||| ||||||||||||||    
T  41424397 aatttggtctctatctttgtaagtaattttcaaatcagtctctgactctattaatattttaaattagtttttatttttgtcaaaaatttttcaattaagt 41424496  T
Q  175 c 175  Q
    |    
T  41424497 c 41424497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 32029738 - 32029628
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaag-tgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttt 164  Q
    ||||||||||| || |||| | |||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||| ||| |||||||| ||| |||     
T  32029738 taaaccatcaaattagtccat-tctttgtaaggtgattttcaaattagtctctgactctatttatattttaaaatagttcatgtctttgtcaaaaatttc 32029640  T
Q  165 tcaattaagtcc 176  Q
    |||||| |||||    
T  32029639 tcaatttagtcc 32029628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 10028655 - 10028741
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtcc 176  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||  |||| ||| | ||||||| ||||||| ||||    
T  10028655 tttgtaagtcattctcaaattagtcactgactctattaatatttcaaattagtctttatccttgccaaaagtttctcaattaggtcc 10028741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 5840355 - 5840410
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||||||||| | ||||||||||||| |||| |||||||||||||||||||||||    
T  5840355 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 5840410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 10028730 - 10028833
Alignment:
Q  73 tcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaa 172  Q
    |||||| ||||| | | ||||||||| ||||||||||||||| | |||||||||||||||| |||  ||||  |||||||| | ||||||| |||||||     
T  10028730 tcaattaggtccatgtatttgtaagtcattctcaaattagtcaccgactctattaatatttcaaatcagtctctatctttgccaaaagtttctcaattag 10028829  T
Q  173 gtcc 176  Q
    ||||    
T  10028830 gtcc 10028833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 12220921 - 12220823
Alignment:
Q  74 caatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaa 172  Q
    |||||||||  || |||||||||||||||   |||| ||||||| ||||| |||||||||||||||| ||  | |||||||  ||||||| ||||||||    
T  12220921 caatttggtttctgtctttgtaagtgattactaaataagtcccttactcttttaatattttaaaataatctttgtctttgttaaaagtttctcaattaa 12220823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 21136793 - 21136728
Alignment:
Q  90 tttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtc 155  Q
    ||||||||| ||||| |||||||||  || |||||||||||||| |||||||||  ||||||||||    
T  21136793 tttgtaagtaattcttaaattagtctttgtctctattaatatttcaaaatagtcactatctttgtc 21136728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 41424551 - 41424599
Alignment:
Q  127 aatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtc 175  Q
    ||||||| |||||||| ||| |||||||| |||||||||||||||||||    
T  41424551 aatatttaaaaatagttcatgtctttgtcaaaagtttttcaattaagtc 41424599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 23961720 - 23961645
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttt 163  Q
    ||||||||||| ||| |||||| |||| |||| || |||||||||| |||||||||| || |||| || |||||||    
T  23961720 tctttgtaagtcattttcaaatcagtctctgattcaattaatatttcaaaatagtccctaactttatcaaaagttt 23961645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 38225760 - 38225709
Alignment:
Q  104 tcaaattagtccctgactctattaatattttaaaatagtccatatctttgtc 155  Q
    ||||||| ||||||||||||||||||| |||||||| || ||| ||||||||    
T  38225760 tcaaattggtccctgactctattaataatttaaaatggttcatgtctttgtc 38225709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 5074617 - 5074516
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||||||| ||| ||| | ||||||||    ||||||||||| ||||||| |||||||||||  | ||||| |||| | |||||||| || ||||||    
T  5074617 taaaccatcaaattgatccatatctttgtaccaaattctcaaattggtccctgtctctattaataactcaaaatggtccctgtctttgtcaaatgttttt 5074518  T
Q  166 ca 167  Q
    ||    
T  5074517 ca 5074516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 23768767 - 23768816
Alignment:
Q  94 taagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    |||||||||||||||||||||  | | | |||||||||||||||||||||    
T  23768767 taagtgattctcaaattagtctataattttattaatattttaaaatagtc 23768816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 29490557 - 29490500
Alignment:
Q  215 ttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaa 272  Q
    |||| |||||||||| |||| ||||||||||| | | ||||| |||||||||||||||    
T  29490557 ttgagaaacttttgataatatttcaaaatagtgtctatctttatcaaaagtttctcaa 29490500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 29490665 - 29490608
Alignment:
Q  106 aaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttt 163  Q
    ||||||||| |||||| |||||||||||||||||| ||  |||||| ||| |||||||    
T  29490665 aaattagtctctgactttattaatattttaaaataatctttatcttcgtcaaaagttt 29490608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 23768922 - 23768882
Alignment:
Q  236 ttcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
    ||||||||||| | ||| |||||||||||||||||||||||    
T  23768922 ttcaaaatagtttatgtttttgtcaaaagtttctcaattaa 23768882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 29490421 - 29490457
Alignment:
Q  239 aaaatagtatttgtctttgtcaaaagtttctcaatta 275  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  29490421 aaaatagtttttgtctttgtaaaaagtttctcaatta 29490457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 276
Target Start/End: Complemental strand, 1972 - 1785
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    ||||| |||||||||| | |||||||| ||||||||| |||||||| ||||||||||   |||||||| ||||||| |||||||||| | || | |||||    
T  1972 tctttataagtgattcactaattagtctctgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttctcaattaagttcctcgt-atgtg 1874  T
Q  188 nnnnnnnncatagaaacatgagtctggttgataaacttttgacaataattcaaaatagtatttgtctttgtcaaaagtttctcaattaa 276  Q
             ||||||| ||||||||  |||| |||| |||||||||| ||| ||||||| | ||||||||||||||||||||| |||||    
T  1873 aaaaaaataatagaaatatgagtctaattgaaaaacatttgacaatatttctaaatagtctatgtctttgtcaaaagtttctccattaa 1785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 1662 - 1750
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttt-tcaattaagtc 175  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||  |   |||||| |||||||| |||||||||||    
T  1662 tctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtctctgcttttgtcaaaagttttctcaattaagtc 1750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 11091 - 10994
Alignment:
Q  78 ttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtc 175  Q
    |||||| || |||| ||||||||||||||||||||||| ||| | ||||||||| |||||||||||  | ||||| || |||||||||||||||||||    
T  11091 ttggtctctgtcttggtaagtgattctcaaattagtccatgaatttattaatatcttaaaatagtctttgtctttatcaaaagtttttcaattaagtc 10994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 10875 - 10959
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaa 172  Q
    ||||| |||||||||||| ||||||||  ||| | ||||||||||||||||||||  ||||||||||| ||||||| ||||||||    
T  10875 tctttttaagtgattctctaattagtctatgattttattaatattttaaaatagtttatatctttgtcaaaagtttctcaattaa 10959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 62669 - 62773
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    |||||||| || ||||||  | |||||||||| ||||||||||||||||   ||||||||| |||||||||| |||| | |||||||||| ||||||| |    
T  62669 taaaccattaaattggtctatgtctttgtaagagattctcaaattagtcaacgactctattgatattttaaattagttcttatctttgtcaaaagtttct 62768  T
Q  166 caatt 170  Q
    |||||    
T  62769 caatt 62773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 122628 - 122563
Alignment:
Q  78 ttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||| ||| |||||    
T  122628 ttggtccctgtctttgtaagaaattctcaaattagtctctgactctattaatatttcaaactagtc 122563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 11984 - 11907
Alignment:
Q  57 tttttcgactaaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatatttt 134  Q
    |||||||| ||||||||||| ||| ||| | ||||||||||| | |||||||||||||| |||||| |||||||||||    
T  11984 tttttcgaataaaccatcaaattgatccatgtctttgtaagtcactctcaaattagtccatgactcaattaatatttt 11907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 11588 - 11542
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatatttt 134  Q
    ||||||||||| | |||||||||||||| |||||| |||||||||||    
T  11588 tctttgtaagtcactctcaaattagtccatgactcaattaatatttt 11542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 17080 - 17169
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtc 155  Q
    ||||| ||||| ||||||||| ||||||||||  | |||||||||||||||  ||||||||||||||||||| |||| | | ||||||||    
T  17080 taaacaatcaagttggtccctgtctttgtaagatactctcaaattagtcccaaactctattaatattttaaactagttcctgtctttgtc 17169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 81946 - 82051
Alignment:
Q  66 taaaccatcaatttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtcgaaagttttt 165  Q
    ||||||||||||||||||  | | ||||||||  | |||||||||||||  |||||||||||||||||  ||||| | |||||||||| | ||||||| |    
T  81946 taaaccatcaatttggtctttgtatttgtaagacactctcaaattagtcattgactctattaatatttccaaataattcatatctttgccaaaagtttat 82045  T
Q  166 caatta 171  Q
    ||||||    
T  82046 caatta 82051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 4850 - 4795
Alignment:
Q  88 tctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtc 143  Q
    ||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||    
T  4850 tctttgtaaattattctcaaattagtctctgattctattaatattttaaaatagtc 4795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 70916 - 70839
Alignment:
Q  78 ttggtccctctctttgtaagtgattctcaaattagtccctgactctattaatattttaaaatagtccatatctttgtc 155  Q
    ||||||||| ||||||||    ||||||||||| ||| |||||||||||||||  | ||||| |||||| ||||||||    
T  70916 ttggtccctgtctttgtactaaattctcaaattggtctctgactctattaatagctcaaaatggtccatgtctttgtc 70839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 12155 - 12091
Alignment:
Q  123 tattaatattttaaaatagtccatatctttgtcgaaagtttttcaattaagtccttcatcatgtg 187  Q
    |||||||||||||||||||||  ||| |||||| |||   ||||||||||||| ||| |||||||    
T  12155 tattaatattttaaaatagtcactatttttgtcaaaaaaatttcaattaagtctttcgtcatgtg 12091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University