View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_low_59 (Length: 301)

Name: NF17117_low_59
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_low_59
NF17117_low_59
[»] chr3 (10 HSPs)
chr3 (20-241)||(9358821-9359044)
chr3 (13-83)||(47820896-47820966)
chr3 (18-76)||(28956951-28957009)
chr3 (22-82)||(28934810-28934868)
chr3 (22-82)||(31525363-31525422)
chr3 (22-82)||(53349401-53349460)
chr3 (22-82)||(55166896-55166955)
chr3 (22-82)||(8431491-8431549)
chr3 (22-82)||(43073120-43073178)
chr3 (13-88)||(20701139-20701213)
[»] chr8 (7 HSPs)
chr8 (18-130)||(30836208-30836320)
chr8 (22-75)||(5200556-5200609)
chr8 (22-64)||(24200695-24200737)
chr8 (22-82)||(10124859-10124920)
chr8 (18-82)||(22839250-22839315)
chr8 (13-76)||(38086481-38086544)
chr8 (13-93)||(25829331-25829410)
[»] chr1 (10 HSPs)
chr1 (18-121)||(43268675-43268778)
chr1 (19-221)||(43460553-43460761)
chr1 (13-93)||(19472786-19472866)
chr1 (22-83)||(41955963-41956024)
chr1 (22-75)||(47028937-47028990)
chr1 (22-91)||(8463044-8463113)
chr1 (22-82)||(12172954-12173013)
chr1 (22-82)||(26990601-26990660)
chr1 (22-82)||(46757306-46757365)
chr1 (22-82)||(31833895-31833953)
[»] chr4 (5 HSPs)
chr4 (19-221)||(16662376-16662584)
chr4 (18-76)||(32183282-32183340)
chr4 (22-76)||(16572074-16572127)
chr4 (13-88)||(25641337-25641413)
chr4 (29-81)||(42390855-42390906)
[»] chr6 (6 HSPs)
chr6 (18-76)||(15859100-15859158)
chr6 (18-82)||(10246910-10246973)
chr6 (22-88)||(33984747-33984813)
chr6 (18-82)||(11546765-11546829)
chr6 (22-82)||(33112791-33112851)
chr6 (13-82)||(34761160-34761229)
[»] chr2 (3 HSPs)
chr2 (22-82)||(41378272-41378332)
chr2 (22-83)||(14732414-14732474)
chr2 (22-83)||(41419616-41419676)
[»] chr7 (8 HSPs)
chr7 (22-93)||(49035930-49036001)
chr7 (22-75)||(41702870-41702923)
chr7 (22-82)||(46691922-46691981)
chr7 (22-81)||(33320704-33320763)
chr7 (18-76)||(31424843-31424902)
chr7 (22-82)||(36615876-36615934)
chr7 (22-82)||(22197668-22197727)
chr7 (22-82)||(22240094-22240153)
[»] chr5 (5 HSPs)
chr5 (21-82)||(2292161-2292223)
chr5 (23-64)||(9931877-9931918)
chr5 (22-82)||(10431056-10431116)
chr5 (25-82)||(819206-819261)
chr5 (13-93)||(23173039-23173118)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 9358821 - 9359044
Alignment:
Q  20 agaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacaccgtaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9358821 agaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaaccaagatgccgcctataaacgtaacaccgtaa 9358920  T
Q  120 acaccaggaaagcacccaaaa-caaaaaaggca-caagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagcc 217  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9358921 acaccaggaaagcacccaaaaccaaaaaaggcaccaagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccagccgagcc 9359020  T
Q  218 aaaaccaataaaacaacaggtccc 241  Q
    ||||||| ||||||| ||||||||    
T  9359021 aaaaccactaaaacagcaggtccc 9359044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 47820966 - 47820896
Alignment:
Q  13 aatataaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccca 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47820966 aatacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccca 47820896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 28957009 - 28956951
Alignment:
Q  18 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaa 76  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  28957009 aaagaaggggaaatcggttgccacacaaacaccggctcgaacaaaaacccctttaaaaa 28956951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 28934810 - 28934868
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||||||||    
T  28934810 aaggggaaatcggttgcc--acaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 28934868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 31525422 - 31525363
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||    
T  31525422 aaggggaaatcggttgccacacaaacaacggctcgaacaaaaa-ccccttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 53349460 - 53349401
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  53349460 aagggaaaatcggttgccgcacaaacaccggctcaaacaaaaa-ccccttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 55166896 - 55166955
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||||||||||||||||||||||||   |||||||||||||| ||| |||||||||||||    
T  55166896 aaggggaaatcggttgccgcacaaactttggctcgaacaaaaa-ccccttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 8431491 - 8431549
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||||||||  || ||||||||||||||||||||| ||| |||||||||||||    
T  8431491 aaggggaaatcggttgcaaca-aaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 8431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 43073120 - 43073178
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||||||||||||||||  | ||||||||||||||||||||| ||| |||||||||||||    
T  43073120 aaggggaaatcggttgcctta-aaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 20701213 - 20701139
Alignment:
Q  13 aatataaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaac 88  Q
    |||| ||| |||||||||||| ||||| |||||  || |||||||||||||| ||||| |||||||||||| ||||    
T  20701213 aatacaaacaaggggaaatcgattgccacacaactac-ggctcgaacaaaaaccccttaaaaaaccacccaaaaac 20701139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 30836208 - 30836320
Alignment:
Q  18 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacaccgt 117  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30836208 aaagaaggggaaatcgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgcctataaacgtaacaccgt 30836307  T
Q  118 aaacaccaggaaa 130  Q
    |||||||||||||    
T  30836308 aaacaccaggaaa 30836320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 5200556 - 5200609
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaa 75  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  5200556 aagggaaaatcggttgccgcacaaacaccggctcgaacaaaaaccccttaaaaa 5200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 24200695 - 24200737
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaa 64  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  24200695 aaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaa 24200737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 10124920 - 10124859
Alignment:
Q  22 aaggggaaatcggttgccgcacaaa-caccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||||||||||||||||  ||||| |||||||||||||||||| ||||| |||||||||||    
T  10124920 aaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 10124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 22839315 - 22839250
Alignment:
Q  18 aaagaaggggaaatcggttgccgcacaaa-caccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||||| ||||||||||||||  | ||| || |||||||||||||||||||||||||||||||||    
T  22839315 aaagaagaggaaatcggttgccatataaaacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 38086481 - 38086544
Alignment:
Q  13 aatataaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaa 76  Q
    |||| ||||||||| ||||||||||||  |||||| | |||||||||||||| |||||||||||    
T  38086481 aatacaaagaagggaaaatcggttgccatacaaactctggctcgaacaaaaacccctttaaaaa 38086544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 25829331 - 25829410
Alignment:
Q  13 aatataaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaagg 93  Q
    |||| ||| ||||||||||||||| ||  | ||||||||||| ||| ||||| ||| |||||||||||||| |||| ||||    
T  25829331 aatacaaacaaggggaaatcggtttccctataaacaccggcttgaataaaaa-ccccttaaaaaccacccataaacaaagg 25829410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 43268675 - 43268778
Alignment:
Q  18 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacaccgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||    
T  43268675 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgtctataaacgtaacactgt 43268774  T
Q  118 aaac 121  Q
    ||||    
T  43268775 aaac 43268778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 43460761 - 43460553
Alignment:
Q  19 aagaaggggaaatcggttgccgcacaaa-caccggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcct-ataaacgta--acac 114  Q
    ||||||||||||||||||||   ||||| ||| | |||||||||||| ||||| ||||||||||  ||||| |||||||||||| | |||||||  ||||    
T  43460761 aagaaggggaaatcggttgcgatacaaaacactgactcgaacaaaaaccccttcaaaaaccaccttcaaacaaaggtgccgcctaaaaaacgtaacacac 43460662  T
Q  115 cgtaaacaccaggaaagcacccaaaa-caaaaaaggca-caagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatcc 212  Q
       ||||||||||||||||||||||| ||||  || || |||||||||||||||||||||||||||| |||  ||||||||||| ||||||| |||| ||    
T  43460661 aaaaaacaccaggaaagcacccaaaaccaaacgagacaccaagcaatgaggctgaagtatactatcatgaaagtagcatactcccacctcactaccagcc 43460562  T
Q  213 gagccaaaa 221  Q
    |||||||||    
T  43460561 gagccaaaa 43460553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 19472866 - 19472786
Alignment:
Q  13 aatataaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaagg 93  Q
    |||| ||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||| |||| ||||    
T  19472866 aatacaaagaaggggaaatcagttgccatacaaactccggctcgaacaaaaatccctttaaaaaccacccataaactaagg 19472786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 41955963 - 41956024
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccca 83  Q
    ||||||||||||||||||  |  |||||||||||||||||||||||||| ||||||||||||    
T  41955963 aaggggaaatcggttgccataataacaccggctcgaacaaaaatcccttaaaaaaccaccca 41956024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 47028990 - 47028937
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaa 75  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  47028990 aaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaaccccttaaaaa 47028937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 8463044 - 8463113
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaa 91  Q
    ||||| |||||||||||| || ||||  ||||||||||||||| ||||| |||||||||||| |||||||    
T  8463044 aagggaaaatcggttgccacaaaaacgtcggctcgaacaaaaaccccttaaaaaaccacccaaaaaccaa 8463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 12173013 - 12172954
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||||||||| |||||||| | ||||||||||||| ||| |||||||||||||    
T  12173013 aaggggaaatcggttgccacacaaacatcagctcgaacaaaaa-ccccttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 26990660 - 26990601
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||| |||||| ||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  26990660 aagggaaaatcgattgccgcacaagcaccggctcaaacaaaaatccc-ttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 46757365 - 46757306
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||| ||||| ||  |||||| ||||||||||||| |||||||||||||||||    
T  46757365 aaggggaaatcgattgccacaataacaccagctcgaacaaaaa-ccctttaaaaaccaccc 46757306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 31833953 - 31833895
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||| |||||||||||| || || |||||||||||||||||| ||| |||||||||||||    
T  31833953 aagggaaaatcggttgccacataa-caccggctcgaacaaaaa-ccccttaaaaaccaccc 31833895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 16662376 - 16662584
Alignment:
Q  19 aagaaggggaaatcggttgccgcacaaa-caccggctcgaacaaaaatccctttaaaaaccacccacaaaccaaggtgccgcctataaa-cgtaa--cac 114  Q
    |||||||| ||||| ||||||  ||||| ||| |||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||  |||    
T  16662376 aagaagggaaaatctgttgccatacaaaacactggctcgtacaaaaacccctttaaaaaccaccctcaaacaaaggtgccgcctataaaacgtaaagcac 16662475  T
Q  115 cgtaaacaccaggaaagcacccaaaacaaaaa-aggcac-aagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatcc 212  Q
       |||||||| |||| |||||||||| |||  |||||| |||||||||||||||||||||  |||| |||  ||||||||||| ||||||| |||| ||    
T  16662476 aaaaaacaccatgaaaacacccaaaaccaaacgaggcaccaagcaatgaggctgaagtatatcatcatgaaagtagcatactccgacctcactaccagcc 16662575  T
Q  213 gagccaaaa 221  Q
    |||||||||    
T  16662576 gagccaaaa 16662584  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 32183340 - 32183282
Alignment:
Q  18 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaa 76  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  32183340 aaagaaggggaaatcggttgccatacaaacaccggctcgaacaaaaacccctttaaaaa 32183282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 16572127 - 16572074
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaa 76  Q
    ||||||||||||||||||||| ||||||||| |||||| |||| |||||||||||    
T  16572127 aaggggaaatcggttgccgcaaaaacaccggttcgaac-aaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 25641337 - 25641413
Alignment:
Q  13 aatataaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatcccttt-aaaaaccacccacaaac 88  Q
    |||| |||||||||||||| |||||||  || |||| ||||||||||||||| || ||| |||||||||||| ||||    
T  25641337 aatacaaagaaggggaaattggttgccatactaacatcggctcgaacaaaaacccttttaaaaaaccacccataaac 25641413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 42390855 - 42390906
Alignment:
Q  29 aatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacc 81  Q
    |||||||||||||  |||||||||||| |||||||| ||| ||||||||||||    
T  42390855 aatcggttgccgctaaaacaccggctcaaacaaaaa-ccccttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 15859158 - 15859100
Alignment:
Q  18 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaa 76  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  15859158 aaagaaggggaaatcggttgccaaacaaacaccggctcgaacaaaaacccctttaaaaa 15859100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 10246973 - 10246910
Alignment:
Q  18 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||||||| |||||||||| | ||||| |||||||||||||||||| |||||||||||||||||    
T  10246973 aaagaagggaaaatcggttgtcacacaa-caccggctcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 33984813 - 33984747
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaac 88  Q
    ||||||||||||||||||  |||||||| || ||||||||||| ||||| |||||||||||| ||||    
T  33984813 aaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccacccataaac 33984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 11546829 - 11546765
Alignment:
Q  18 aaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||| ||||||||||| |  |||||||||||||||||||||||  |||| |||||| ||||    
T  11546829 aaagaaggagaaatcggttgtcatacaaacaccggctcgaacaaaaactccttaaaaaactaccc 11546765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 33112791 - 33112851
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||||||||||||||||  ||||||   |||||||||||||| ||||| |||||||||||    
T  33112791 aaggggaaatcggttgccatacaaactttggctcgaacaaaaaccccttaaaaaaccaccc 33112851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 34761229 - 34761160
Alignment:
Q  13 aatataaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||| |||||||  ||||||||||| |  |||||||||| ||||||||||||  |||| |||||||||||    
T  34761229 aatacaaagaagaagaaatcggttgtcatacaaacaccgactcgaacaaaaactccttaaaaaaccaccc 34761160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 41378272 - 41378332
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||    
T  41378272 aaggggaaatcggttgccacacaaactccggctcgaataaaaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 14732414 - 14732474
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccca 83  Q
    ||||||||||||||| ||||| ||| ||| ||||||||||||| ||| ||||||||||||||    
T  14732414 aaggggaaatcggttaccgcaaaaataccagctcgaacaaaaa-ccccttaaaaaccaccca 14732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 41419676 - 41419616
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccca 83  Q
    ||||||||||||||||||  |  ||||||| |||||||||||| ||| ||||||||||||||    
T  41419676 aaggggaaatcggttgccataataacaccgactcgaacaaaaa-ccccttaaaaaccaccca 41419616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 49035930 - 49036001
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaagg 93  Q
    |||||||||||||||||| || ||||||||| ||||||||||| ||||| |||||||||||| |||| ||||    
T  49035930 aaggggaaatcggttgccacataaacaccggttcgaacaaaaaccccttaaaaaaccacccataaacaaagg 49036001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 41702923 - 41702870
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaa 75  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  41702923 aaggggaagtcggttgccgcacaaacaccggctcgaacaaaaaccccttaaaaa 41702870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 46691922 - 46691981
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||    
T  46691922 aaggggaaatcggttgccacataaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 33320763 - 33320704
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacc 81  Q
    |||||||||| |||||||  ||||||||||||||||||||||  ||||| ||||||||||    
T  33320763 aaggggaaattggttgccttacaaacaccggctcgaacaaaacccccttaaaaaaccacc 33320704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31424843 - 31424902
Alignment:
Q  18 aaagaaggggaaatcggttgccgcac-aaacaccggctcgaacaaaaatccctttaaaaa 76  Q
    ||||||||||||||||||||||   | |||||||||||||| |||||| |||||||||||    
T  31424843 aaagaaggggaaatcggttgccattcgaaacaccggctcgatcaaaaacccctttaaaaa 31424902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 36615876 - 36615934
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    ||||||||||||||||||  |||||| || ||||||||||||| || || |||||||||||    
T  36615876 aaggggaaatcggttgcc--acaaactccagctcgaacaaaaaccctttaaaaaaccaccc 36615934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 22197727 - 22197668
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||| || || || |||||||| |||||||||||| ||||| |||||||||||    
T  22197727 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22197668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 22240094 - 22240153
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||| || || || |||||||| |||||||||||| ||||| |||||||||||    
T  22240094 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22240153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 2292223 - 2292161
Alignment:
Q  21 gaaggggaaatcggttgccgcacaaa-caccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||||||||||  ||||| |||||||||||||||||| ||||| |||||||||||    
T  2292223 gaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 2292161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 9931877 - 9931918
Alignment:
Q  23 aggggaaatcggttgccgcacaaacaccggctcgaacaaaaa 64  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  9931877 aggggaaatcggttgccgcacaaacaccagctcgaacaaaaa 9931918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 10431116 - 10431056
Alignment:
Q  22 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||| ||||||||||||| ||||||||||| |||||||||||| | | | |||||||||||    
T  10431116 aaggagaaatcggttgccacacaaacaccgactcgaacaaaaacctcataaaaaaccaccc 10431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 819206 - 819261
Alignment:
Q  25 gggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccaccc 82  Q
    |||||||||||||||  |||||||||  |||||||||||| ||||| |||||||||||    
T  819206 gggaaatcggttgcc--acaaacaccaactcgaacaaaaaccccttaaaaaaccaccc 819261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 23173039 - 23173118
Alignment:
Q  13 aatataaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaatccctttaaaaaccacccacaaaccaagg 93  Q
    |||| ||| |||| |||||| ||||||  | |||||||||||||||| |||| ||| |||||||||||||| |||| ||||    
T  23173039 aatacaaacaaggagaaatcagttgccctataaacaccggctcgaac-aaaacccccttaaaaaccacccataaacaaagg 23173118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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