View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_low_6 (Length: 615)

Name: NF17117_low_6
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_low_6
NF17117_low_6
[»] chr2 (1 HSPs)
chr2 (110-597)||(26376908-26377398)
[»] scaffold1211 (1 HSPs)
scaffold1211 (316-575)||(891-1152)
[»] chr3 (2 HSPs)
chr3 (109-184)||(50063925-50064000)
chr3 (116-176)||(7227152-7227212)
[»] chr1 (2 HSPs)
chr1 (114-184)||(33966650-33966720)
chr1 (116-184)||(50204531-50204599)
[»] chr6 (2 HSPs)
chr6 (109-184)||(25101044-25101119)
chr6 (147-184)||(23890001-23890038)
[»] chr5 (1 HSPs)
chr5 (116-176)||(43281148-43281208)
[»] chr8 (1 HSPs)
chr8 (114-170)||(29168556-29168612)
[»] chr7 (1 HSPs)
chr7 (116-176)||(46082492-46082552)


Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 110 - 597
Target Start/End: Complemental strand, 26377398 - 26376908
Alignment:
Q  110 ggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatccttcctactattagaaacccaaaacaa 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26377398 ggaatgaagtcgaagcacggtggaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatccttcctactattagaaacccaaaacaa 26377299  T
Q  210 atctttttactctagtctaagaattgcattnnnnnnnnctactatagcccatgtgtcgtctgagacgtgtacaattgacaaccaatcattttgttcttgt 309  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  26377298 atctttttactctagtctaagaattgcattaaaaaaaactactatagcccatgtgtcgtcagagacgtgtacagttgacaaccaatcattttgttcttgt 26377199  T
Q  310 gcattcatttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaaccca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377198 gcattcatttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaaccca 26377099  T
Q  410 taagcatatgctgcacctttcatagttgcttaactataccacagcaaattgggac--agtgtccatatttgtaggttttctactttataatattttcagg 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  26377098 taagcatatgctgcacctttcatagttgcttaactataccacagcaaattgggacatagtgtccatatttgtaggttttctactttataatattttcagg 26376999  T
Q  508 aggtacgaggtgtgttggatgttattcaagttctggagcggaacagaataacaaagcagaagag-aaaagaaagtgataaatgaaatacct 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  26376998 aggtacgaggtgtgttggatgttattcaagttctggagcggaacagaataacaaagcagaagagaaaaagaaagcgataaatgaaatacct 26376908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1211 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold1211
Description:

Target: scaffold1211; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 316 - 575
Target Start/End: Complemental strand, 1152 - 891
Alignment:
Q  316 atttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaacccataagca 415  Q
    ||||||| ||| |||||  |||| ||||| ||| ||||| ||||||||||||| ||||||||||| ||  ||||||| | |||||||||| || ||||||    
T  1152 atttatcaacagtctttgcagtcagatttgctagtctaaaatctagtctctaccatcaataagtttaagaaactttcaaatacaatacaaaccgtaagca 1053  T
Q  416 tatgctgcacctttcatagttgcttaactataccacagcaaattgggac---agtgtccatatttgtaggttttctactttataatattttcaggaggta 512  Q
    ||||  | ||||||||| ||||| |||||||||  ||||  ||||||||   ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  1052 tatgtggaacctttcatggttgcataactatactgcagc-cattgggacataagtgtccatatttgtaggtattcaactttataatattttcaggaggta 954  T
Q  513 cgaggtgtgttggatgttattcaagttctggagcggaacagaataacaaagcagaagagaaaa 575  Q
    |  ||||  ||  ||||||| ||||||||||| | |||||||||||||||| |||||||||||    
T  953 ctgggtggattaaatgttatgcaagttctggaacagaacagaataacaaagtagaagagaaaa 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 50064000 - 50063925
Alignment:
Q  109 cggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 184  Q
    |||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  50064000 cggagtgaagtcgaagctcggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcct 50063925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 7227212 - 7227152
Alignment:
Q  116 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac 176  Q
    ||||||||||| ||| ||||||| |||| | |||||||||||  |||||| ||||||||||    
T  7227212 aagtcgaagcatggtcgaggtgctgtgggacgtagaatcgtacaatcctaagagccagcac 7227152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 33966720 - 33966650
Alignment:
Q  114 tgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 184  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  33966720 tgaagtcaaagcacggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcct 33966650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 50204599 - 50204531
Alignment:
Q  116 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 184  Q
    ||||||||||||| | ||||||| |||| | |||| ||| || |||||||||| ||||||| |||||||    
T  50204599 aagtcgaagcacgattgaggtgctgtggaacgtaggatcatacgatcctacgaaccagcactcgatcct 50204531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 25101044 - 25101119
Alignment:
Q  109 cggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 184  Q
    |||| ||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||||||||| |||||||    
T  25101044 cggagtgaagtcgaagcacggttgaggtgccgtgggacatagaatcgtaagatcctacgagccagcactcgatcct 25101119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 23890001 - 23890038
Alignment:
Q  147 gtagaatcgtaagatcctacgagccagcacacgatcct 184  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  23890001 gtagaatcgtacgatcctacgagccagcactcgatcct 23890038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 43281148 - 43281208
Alignment:
Q  116 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac 176  Q
    ||||||||||| | | |||||||||||| ||||||||||||| ||||||| || |||||||    
T  43281148 aagtcgaagcatgattgaggtgccgtgggatgtagaatcgtacgatcctatgaaccagcac 43281208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 29168556 - 29168612
Alignment:
Q  114 tgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagc 170  Q
    ||||||||||||||||| ||||||| |||||| |||  |||||  ||||||||||||    
T  29168556 tgaagtcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgagc 29168612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 46082492 - 46082552
Alignment:
Q  116 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac 176  Q
    ||||||||||||||| ||||||| | || |  |||||||||| ||||||| ||||||||||    
T  46082492 aagtcgaagcacggttgaggtgcggagggacatagaatcgtacgatcctatgagccagcac 46082552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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