View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_60 (Length: 300)
Name: NF17117_low_60
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_60 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 150 - 300
Target Start/End: Original strand, 44551337 - 44551487
Alignment:
| Q |
150 |
ctaaacttattgtcaaactcaaataacacattcaacatggtaattctttcaaccaagtgtcgcaccaaaaataccaaaaccttttaccacacaaacatca |
249 |
Q |
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| T |
44551337 |
ctaaacttattgtcaaactcaaataacacattcaacatggtaattctttcaaccaagtgtcgcaccaaaaataccaaaaccttttaccacacaaacatca |
44551436 |
T |
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| Q |
250 |
actaaaggttcgtgcataaattttgtcaccccaagatattaaattcatctc |
300 |
Q |
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| T |
44551437 |
actaaaggttcatgcataaattttgtcaccccaagatattaaattcatctc |
44551487 |
T |
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Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 44548649 - 44548794
Alignment:
| Q |
16 |
ggaatatcgttaaaaacttgagaacaaacctttggtcaagcatgatcaaccttctgacttgtgttcttagcaatctctactcaagagttgt--nnnnnnn |
113 |
Q |
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| T |
44548649 |
ggaatatcgttaaaaacttgagaacaaacctttggtcaagcatgatcaaccttctgacttgtgttcttagcgatctctactcaagagttgtaaaaaaaaa |
44548748 |
T |
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| Q |
114 |
nnnnnngatgacttgtacttttgaaactatccatcactaaacttat |
159 |
Q |
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| T |
44548749 |
caagaagatgacttgtacttttgaaactatccatcactaaacttat |
44548794 |
T |
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