View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_7 (Length: 605)
Name: NF17117_low_7
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 103 - 589
Target Start/End: Complemental strand, 34852430 - 34851945
Alignment:
| Q |
103 |
ctcagcaagcacctcatcaagtcacaaaacccttattagttgtatcagaaacgatcggaactcaactccccggaaaaagcaaaaccttgccgtgtcatcg |
202 |
Q |
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| T |
34852430 |
ctcagcaagcacctcatcaaatcacaaaacccttattagttgtatcagaaacgatcggaactcaactccccggaaaaagcaaaaccttgccgtgtcatcg |
34852331 |
T |
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| Q |
203 |
tagggacgaaggcagccgctagaaacatcatacaggnnnnnnnnnnnnnnnnnnaccaaattttcttccctttgaaaatcgcgtttcagaataagctcaa |
302 |
Q |
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| T |
34852330 |
tagggacgaaggcagccgctagaaacatcatacaggttttcctttttcttttttaccaaattttcttccctttgaaaatcgcgtttcagaataagctcaa |
34852231 |
T |
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| Q |
303 |
ttcccgcaccgcgattaacaacatagtttagtttttgacgtttatttacatgtgtaggaaggtgaaattggccaaaatcgatgccgattacccgtcgttg |
402 |
Q |
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| T |
34852230 |
ttcc-gcaccgcgattaacaacatagtttagtttttaacgtttatttacatgtgtaggaaggtgaaattggcgaaaatcgatgccgattacccgtcgttg |
34852132 |
T |
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| Q |
403 |
tgaatcatctaaagagatttcgttttccagagctgccaaaattttctccaattttgtctctgctgacaatggtgcttcagggggctatgatgttattctt |
502 |
Q |
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| T |
34852131 |
tgaatcatctaaagagatttcgctttccagagctgccaaaattttctccaattttgtctctgctgacaatggtgcttcagggggctatgatgttattctt |
34852032 |
T |
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| Q |
503 |
ggaaagactttcaagggtttcaacttgctcaaccagcttcacaaggaacttaaactatcaaaatctcataggaagaatcgtcaaagc |
589 |
Q |
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| T |
34852031 |
ggaaagactttcaagggtttcaacttgctcaaccagcttcacaaggaacttaaactatcaaaatctcataggaagaatcgtcaaagc |
34851945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 400 - 480
Target Start/End: Original strand, 4297471 - 4297551
Alignment:
| Q |
400 |
ttgtgaatcatctaaagagatttcgttttccagagctgccaaaattttctccaattttgtctctgctgacaatggtgcttc |
480 |
Q |
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||||||||||||||||||||| || |||| | |||| | |||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
4297471 |
ttgtgaatcatctaaagagatatcactttcaaaagcttcaaaaattctctccaaatttgtctctgctgacaacggtgcttc |
4297551 |
T |
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