View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17117_low_71 (Length: 281)
Name: NF17117_low_71
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_71 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 27641374 - 27641121
Alignment:
| Q |
20 |
ccctactcctttgttccattcatagctccatttccaacctcctctcaatcttcgattcgcattcctttcatcttttgattgatctccctcaaattctcat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27641374 |
ccctactcctttgttccattcatagctccatttccaacctcctctcaatcttcaattcgcattcctttcatcttttgattgacctccctcaaattctcat |
27641275 |
T |
|
| Q |
120 |
caataacataggacaaatcattaagatcaggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttcctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27641274 |
caataacataggacaaatcattaagatcaggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttcctt |
27641175 |
T |
|
| Q |
220 |
ctttctggtttccttcatttgtttcttcaactgctcatagacttttcctatgct |
273 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
27641174 |
ctttctggtttccttcatttgtgtcttcaactgctcatagacttttccaatgct |
27641121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 47 - 273
Target Start/End: Original strand, 26457895 - 26458121
Alignment:
| Q |
47 |
ccatttccaacctcctctcaatcttcgattcgcattcctttcatcttttgattgatctccctcaaattctcatcaataacataggacaaatcattaagat |
146 |
Q |
| |
|
|||||||||||||||| | ||||| |||| |||| |||||||||| |||| | |||| |||||||||||||||||| | | || |||||||| |||| |
|
|
| T |
26457895 |
ccatttccaacctccttttgatctttgattgtcatttctttcatcttcagattaacctccttcaaattctcatcaataaaagatgaaaaatcattgagat |
26457994 |
T |
|
| Q |
147 |
caggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttccttctttctggtttccttcatttgtttctt |
246 |
Q |
| |
|
||| ||||||||| ||| ||||||||||||| |||| ||||| |||||| ||||||||||||||||||| ||||||||||||||| | |||| ||||| |
|
|
| T |
26457995 |
cagatttgctcatcgaatttccattaaattctatggtttgaatataatgatcaatgatattggtcatttccatctttctggtttcctccctttgcttctt |
26458094 |
T |
|
| Q |
247 |
caactgctcatagacttttcctatgct |
273 |
Q |
| |
|
||||||||| |||||||| || ||||| |
|
|
| T |
26458095 |
caactgctcgtagactttcccaatgct |
26458121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 23675572 - 23675356
Alignment:
| Q |
48 |
catttccaacctcctctcaatcttcgattcgcattcctttcatcttttgattgatctccctcaaattctcatcaataacataggacaaatcattaagatc |
147 |
Q |
| |
|
||||||||||||| ||| ||||| ||| |||| |||||||||| ||| | |||| |||||||||||||||||| | | || |||||||||||||| |
|
|
| T |
23675572 |
catttccaacctcgtcttgatctttaattgtcatttctttcatcttccgatcaacctccttcaaattctcatcaataaaagatgaaaaatcattaagatc |
23675473 |
T |
|
| Q |
148 |
aggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttccttctttctggtttccttcatttgtttcttc |
247 |
Q |
| |
|
| |||||||||| ||| ||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
23675472 |
atatttgctcattgaatttccattaaattctacggtttgaatataatgatcaatgatattggtcatttccttctttctggtttccaacctttgcttcttc |
23675373 |
T |
|
| Q |
248 |
aactgctcatagacttt |
264 |
Q |
| |
|
|||||| | |||||||| |
|
|
| T |
23675372 |
aactgcccgtagacttt |
23675356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University