View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_73 (Length: 267)
Name: NF17117_low_73
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 12454153 - 12454394
Alignment:
| Q |
15 |
aagaggaggtgcaggttcttcaacatgtaatgctgcaggtgagatttttcagattgcagctattatgaatggacttactcttgttggtgttgctgttgga |
114 |
Q |
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| T |
12454153 |
aagaggaggtgcaggttcttcaacatgtaatgctgcaggtgagatttttcagattgcagctattatgaatggacttactcttgttggtgttgctgttgga |
12454252 |
T |
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| Q |
115 |
tttgttcttcttcgaattgaagctgctgttgaagaagctgagtaagaatttttcatatatatttgtaataatgtaatgtaagtttatatcaggaagnnnn |
214 |
Q |
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| T |
12454253 |
tttgttcttcttcgaattgaagctgctgttgaagaagctgagtaagaatttttcatatatatttgtaataatgtaatgtaagtttatatcaggaag---a |
12454349 |
T |
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| Q |
215 |
nnnntacaatttgtatgttatgtttgattcttgatgtgatgatgt |
259 |
Q |
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| T |
12454350 |
aaaatacaatttgtatgttatgtttgattcttgatgtgatgatgt |
12454394 |
T |
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