View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17117_low_75 (Length: 258)

Name: NF17117_low_75
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17117_low_75
NF17117_low_75
[»] chr8 (1 HSPs)
chr8 (1-242)||(34657117-34657358)
[»] chr5 (4 HSPs)
chr5 (1-181)||(39817759-39817939)
chr5 (3-80)||(39783460-39783537)
chr5 (3-80)||(39775990-39776067)
chr5 (12-69)||(39793061-39793118)
[»] scaffold0013 (2 HSPs)
scaffold0013 (1-84)||(21040-21123)
scaffold0013 (1-84)||(26383-26466)
[»] chr2 (4 HSPs)
chr2 (1-89)||(10578336-10578422)
chr2 (12-71)||(10326285-10326344)
chr2 (12-71)||(10329575-10329634)
chr2 (15-71)||(10332802-10332858)
[»] scaffold0437 (1 HSPs)
scaffold0437 (1-80)||(5285-5364)
[»] chr6 (2 HSPs)
chr6 (3-56)||(7823218-7823271)
chr6 (3-107)||(7830981-7831085)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34657358 - 34657117
Alignment:
Q  1 atttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcctcattgttctattttccttgggggccacaa 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34657358 atttgtgaagcttgaaaagataacaattacaatacaaggatcatgagatttcaatcccttgtttttatcctcattgttctattttccttgggggccacaa 34657259  T
Q  101 ttcaagctataccatcaggcgattcaagcctcatcaacatcaaggatccacatgtgattcaaatcgctgagtatgctattaatgagcaaaacgcggaaaa 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34657258 ttcaagctataccaccaggcgattcaagcctcatcaacatcaaggatccacatgtgattcaaatcgctgagtatgctattaatgagcaaaacgcggaaaa 34657159  T
Q  201 tcaagggccggaattgaagttggagaaagtcatcaatattat 242  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  34657158 tcaagggccggaattaaagttggagaaagtcatcaatattat 34657117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 39817939 - 39817759
Alignment:
Q  1 atttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcctcattgttctattttccttgggggccacaa 100  Q
    |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |||  |||||| ||| |||     ||||| |    
T  39817939 atttgtgaagtttgaaaagataacaattacaatacaagcatcatgagatttcaatcccttgttcttattctcgctgttctttttgcctcatttgccacga 39817840  T
Q  101 ttcaagctataccatcaggcgattcaagcctcatcaacatcaaggatccacatgtgattcaaatcgctgagtatgctatta 181  Q
     ||||||||||||  ||  | |||  || | |||||||||||| ||||||| ||||||  |||| |||| || ||||||||    
T  39817839 atcaagctataccgccaaacaatttgagacgcatcaacatcaatgatccacgtgtgatcgaaatggctgggtttgctatta 39817759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 39783537 - 39783460
Alignment:
Q  3 ttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcctcattgttct 80  Q
    |||||||  ||||||| ||| ||||||||||| ||| ||||||  | ||||||||||||||||||| |||||||||||    
T  39783537 ttgtgaaacttgaaaatatagcaattacaatagaagcatcatgaaacttcaatcccttgtttttattctcattgttct 39783460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 39776067 - 39775990
Alignment:
Q  3 ttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcctcattgttct 80  Q
    ||||||| |||||||| ||| || |||||||| ||| ||||||  | ||||||||| ||||||||| |||||||||||    
T  39776067 ttgtgaaaattgaaaatatagcagttacaatagaagcatcatgacacttcaatcccctgtttttattctcattgttct 39775990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 39793118 - 39793061
Alignment:
Q  12 ttgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatc 69  Q
    |||||||| ||||||||| |||||||  ||| || |||||||||| ||||||||||||    
T  39793118 ttgaaaagttaacaattaaaatacaaacatcttgagatttcaatctcttgtttttatc 39793061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21040 - 21123
Alignment:
Q  1 atttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcctcattgttctattt 84  Q
    |||||||||  |||||||| |||||||||||||| ||| |||||| |||| |||||||||||| |||||||  |||||||||||    
T  21040 atttgtgaatcttgaaaagttaacaattacaatataagcatcatgagattccaatcccttgttcttatccttgttgttctattt 21123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 26383 - 26466
Alignment:
Q  1 atttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcctcattgttctattt 84  Q
    |||||||||  ||||||||||||||||||||||| ||| |||||| |||| |||||||||||  |||||||  |||||||||||    
T  26383 atttgtgaatcttgaaaagataacaattacaatataagcatcatgagattccaatcccttgtgcttatccttgttgttctattt 26466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 10578336 - 10578422
Alignment:
Q  1 atttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcctcattgttctattttcctt 89  Q
    |||||||||  ||||||||||||||||||||||  ||| |||||| |||||||||| ||| || |||| ||||||||||||||| ||||    
T  10578336 atttgtgaatcttgaaaagataacaattacaat--aagcatcatgagatttcaatctcttattcttattctcattgttctatttgcctt 10578422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 10326285 - 10326344
Alignment:
Q  12 ttgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcct 71  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||| |||||| |||||||    
T  10326285 ttgaaaagataacaattacaatataagcatcatgagatttcaatcacttgttcttatcct 10326344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 10329575 - 10329634
Alignment:
Q  12 ttgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcct 71  Q
    ||||||||||||||||||||||| |||  ||||| |||||||||| ||||||||||||||    
T  10329575 ttgaaaagataacaattacaatataagcttcatgagatttcaatcacttgtttttatcct 10329634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 10332802 - 10332858
Alignment:
Q  15 aaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcct 71  Q
    |||||||||||||||||||| ||| |||||| |||||||||| |||| | |||||||    
T  10332802 aaaagataacaattacaatataagcatcatgagatttcaatcacttgatcttatcct 10332858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 5364 - 5285
Alignment:
Q  1 atttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcctcattgttct 80  Q
    |||||||||  ||||| |||||||||||| || ||||  ||||||||||||||||| |||||| ||||| ||||||||||    
T  5364 atttgtgaactttgaagagataacaattataagacaatcatcatgggatttcaatctcttgttcttatcgtcattgttct 5285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 7823271 - 7823218
Alignment:
Q  3 ttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatc 56  Q
    |||| ||| |||||||||||||||||| |||||||| |||||| ||||||||||    
T  7823271 ttgtaaagcttgaaaagataacaattataatacaagcatcatgagatttcaatc 7823218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 7831085 - 7830981
Alignment:
Q  3 ttgtgaagattgaaaagataacaattacaatacaaggatcatgggatttcaatcccttgtttttatcctcattgttctattttccttgggggccacaatt 102  Q
    |||| ||| ||||| |||||||||||| |||||||| |||||| ||||||| || ||| || || |||| |||||| | ||| |||  | |||||||| |    
T  7831085 ttgtaaagcttgaagagataacaattataatacaagcatcatgagatttcagtctctttttcttgtccttattgttttgtttgcctcagtggccacaaat 7830986  T
Q  103 caagc 107  Q
    |||||    
T  7830985 caagc 7830981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University