View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17117_low_76 (Length: 257)
Name: NF17117_low_76
Description: NF17117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17117_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 39982905 - 39983134
Alignment:
| Q |
18 |
tttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttggg |
117 |
Q |
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| T |
39982905 |
tttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccaacaaattactggcattttgtcaaatcttggg |
39983004 |
T |
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| Q |
118 |
aaggggtaacaggaattctaatggttgtgctaatggcaatagcctttacactggccaatactaggttcaggaggaatcgcaccaaactacctaaaccctt |
217 |
Q |
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| T |
39983005 |
aaggggtaacaggaattctaatggttgtgctaatggcaatagcctttacactggccaatactaggttcaggaggaatcgcaccaaactacctaaaccctt |
39983104 |
T |
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| Q |
218 |
caacaaactcacaggtttcaatgccctttg |
247 |
Q |
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| T |
39983105 |
caacaaactcacaggtttcaatgccttttg |
39983134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 44915263 - 44915434
Alignment:
| Q |
18 |
tttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttggg |
117 |
Q |
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| T |
44915263 |
tttcctcgccttcttcatgcaaatagtgaaaagtacaagctcatggaaccattttttggaaagcaaccaacaagttattggcattttgtgaaatcatggg |
44915362 |
T |
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| Q |
118 |
aaggggtaacaggaattctaatggttgtgctaatggcaatagcctttacactggccaatactaggttcagga |
189 |
Q |
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| T |
44915363 |
aaggagtaacggggattgtaatggttgttttaatgacaatagccttcacactggctagtccttggttcagga |
44915434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 44885624 - 44885769
Alignment:
| Q |
18 |
tttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttggg |
117 |
Q |
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||||| ||| |||||||||||| | ||||||||||||||| || || || ||||| ||| || || || ||||||| ||||||||||| ||||| |||| |
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| T |
44885624 |
tttccacgccttcttcatgcaaatagtgaaaagtacaagctcatggaaccattttttggaaagcaagcaacaaattattggcattttgtgaaatcatggg |
44885723 |
T |
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| Q |
118 |
aaggggtaacaggaattctaatggttgtgctaatggcaatagcctt |
163 |
Q |
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| T |
44885724 |
aaggagtaacagggattataatggttgttttaatggcaatagcctt |
44885769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 44899034 - 44899153
Alignment:
| Q |
44 |
tgaaaagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggtt |
143 |
Q |
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|||||||||| |||| || || || ||||| ||| || || || ||| ||| ||||||||||| ||||| |||||||| |||||||| ||| |||||||| |
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| T |
44899034 |
tgaaaagtacgagctcatggaaccattttttggaaagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataatggtt |
44899133 |
T |
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| Q |
144 |
gtgctaatggcaatagcctt |
163 |
Q |
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|| ||||| |||| ||||| |
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| T |
44899134 |
gttttaatgacaattgcctt |
44899153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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